Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi238g00038 ATGTTCCACCCTCTACGGCGTCGTATTGGTGCTATAGCTGCACCCGCTTCGTTCACCTCGTGGACCACAACGACGTCGTTTGCCCCCACTGCCAAAGCGGTTTCGTCGAAGAGATCCAAGCCGGTCAATCGCCGGCGGTTTCCCTCTTCGCCGACGGCTTTCACTCTTCAAGGAGGCAAGGGTTCCGCCGGAGACGCCGCAACGCCGGTAGCCGCTCGCCGTTTAAACCCTGTAATCGTTCTCCGTGGACCCGGGGAGGACGATAGCGAGGGGAGCAGCTTCGAATTGTACTACGACGACGGCGATGGCAACGGTCTCCGACCACTGCCGCCGACCATGTCGGAGTTGTTGCTAGGTTCTGGCTTCGATCGGTTGCTGGAGCAGTTCTCTCAGATCGAGATCAACGGCTTCGGGCGGCCAGAGAATCCGCCGGCGTCGAAGGCGGCGATAGAGTCAATGCCGACGGTTGAGATTGCGGAGGAGCAGGTGGAGTCGGAGACGCACTGTGCGGTGTGCAAAGAAGCGTTCGAGCTAGGTTCGGAGGTGCGTGAGATGCCGTGTAAGCACCTTTACCATTCGGATTGCATTCTTCCATGGCTTTCGATGCACAACTCGTGCCCTGTGTGCCGCCACGAGTTGCCTTCGGATCAAAACCCTGTGGAAAACAGAGTCTCCGGTCAGATCGACGAAGAAGCGGTAGGGTTGACCATATGGAGGTTGCCGGGAGGTGGATTCGCCGTCGGGAGATTCTCCGGTGGTCGAAGAGCCGGTGACAGTCACTTGCCGATCGTGTACACGGAGATGGATGGTGGTGGTAACAATTCAAATTATGGAGGTTCCAGAAGAATCTCCCTCGCAGTGGGAAGCAGCAGAGTTAGAGAGAGTCGTGGAATTCGCAGAGTTTTTCGCAATTTCTTGTCGTTCTTTGGTTCTTTGAATAGAAACCGTAGCTTTTCCGGTTCTTTGTTCAGTAGAAGCTCACGGAGAAGAAGCACGACTTGGGTCAATGAAGATTAA 1017 0.5575 MFHPLRRRIGAIAAPASFTSWTTTTSFAPTAKAVSSKRSKPVNRRRFPSSPTAFTLQGGKGSAGDAATPVAARRLNPVIVLRGPGEDDSEGSSFELYYDDGDGNGLRPLPPTMSELLLGSGFDRLLEQFSQIEINGFGRPENPPASKAAIESMPTVEIAEEQVESETHCAVCKEAFELGSEVREMPCKHLYHSDCILPWLSMHNSCPVCRHELPSDQNPVENRVSGQIDEEAVGLTIWRLPGGGFAVGRFSGGRRAGDSHLPIVYTEMDGGGNNSNYGGSRRISLAVGSSRVRESRGIRRVFRNFLSFFGSLNRNRSFSGSLFSRSSRRRSTTWVNED 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi238g00038 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 216 IPR013083 -
Sebi238g00038 338 MobiDBLite consensus disorder prediction 32 66 - -
Sebi238g00038 338 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 97 214 - -
Sebi238g00038 338 Pfam Ring finger domain 168 210 IPR001841 -
Sebi238g00038 338 ProSiteProfiles Zinc finger RING-type profile. 169 210 IPR001841 -
Sebi238g00038 338 Pfam Protein of unknown function (DUF1117) 233 328 IPR010543 -
Sebi238g00038 338 SUPERFAMILY RING/U-box 149 217 - -
Sebi238g00038 338 CDD RING-H2_RNF126-like 169 210 - -
Sebi238g00038 338 SMART ring_2 169 209 IPR001841 -
Sebi238g00038 338 FunFam E3 ubiquitin-protein ligase RING1-like 131 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi238g00038 Sebi-Chr238 731906 732922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi238g00038 108 221 C3H Transcription Factor Family AT5G01980 45.614 8.98e-28 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi238g00038 K11982 - gmx:100804867 379.793