Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi238g00034 ATGGAGATGAACAACATGGAAAATCACGCCATTGTCTCCACTAATGTCTTTATGGGAACCCCAAGCCAGGGATCTTCAAGTACCCAACATCCTCACATTGCTATCCCCATTGATGAACTAACAGGAGCAATGGAAGATGCAAAGGAGAATAAGAATTTAACTGATAGCAAGGACAATGACAAAAAAACTGAAGAAACGGGTGAATGTAGATACTGCCAAGAAGAGGAACCGGTTTTCAAACTAGAAACACCCTGTGGTTGCACTGGCAGCTTGAAGTTCGCTCATAGGAAGTGCATTTCCCAGTGGTGTGACAGAAAGGGGAATATCACTTGTGAATTATGCAAACAGCCTTATCATCCAAACTATGTTGTGACGGTGCCTCATTTTTATTATCATGATCATGACGATGAGGAGATTGACATGAGGCAATAA 432 0.419 MEMNNMENHAIVSTNVFMGTPSQGSSSTQHPHIAIPIDELTGAMEDAKENKNLTDSKDNDKKTEETGECRYCQEEEPVFKLETPCGCTGSLKFAHRKCISQWCDRKGNITCELCKQPYHPNYVVTVPHFYYHDHDDEEIDMRQ 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi238g00034 143 SUPERFAMILY RING/U-box 65 119 - -
Sebi238g00034 143 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 126 IPR013083 -
Sebi238g00034 143 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 44 127 IPR033275 -
Sebi238g00034 143 MobiDBLite consensus disorder prediction 40 67 - -
Sebi238g00034 143 Coils Coil 37 57 - -
Sebi238g00034 143 ProSiteProfiles Zinc finger RING-CH-type profile. 61 121 IPR011016 GO:0008270
Sebi238g00034 143 SMART ringv_2 68 115 IPR011016 GO:0008270
Sebi238g00034 143 Pfam RING-variant domain 69 114 IPR011016 GO:0008270
Sebi238g00034 143 CDD RING_CH-C4HC3_MARCH 69 115 - -
Sebi238g00034 143 MobiDBLite consensus disorder prediction 42 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi238g00034 Sebi-Chr238 698704 699582 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi238g00034 79 114 C3H Transcription Factor Family AT5G59000 47.222 6.07e-06 42.4