Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi238g00025 ATGGAAAACATTAATGAAAACGTTGGTGAGAATGTTGTTGGGTTGGAAGAAATTGAAAGTGAAGATGATGGTGACAATGCATTTCATTACGACTCTCGTCAATTTGTAATTGGGGTGGATTCTGAGGCTGATTTTGTTGACCTTAATCCTGACTTGTTATCTGAGGAAAACTTGAAGAATTTCAATTTTCCTAATCTGGATGTTGCTTATAATTTTTACAATAATTGGTATGGAAAAATGAAGGGTTTTTCGGCACGAAAGGGCAAAGAACGTAAAAATGCAATGGAAGAAATTATTGAGAAGACGTATCTATGCCATAGGGAAGGAAAGAGACCAATTAATACAAATGAAAAGACGGGGAAGAAAAAACGTGAAGCAAAGCCTGAGACAAGGTGTTTATGTCCTGCAAAAATGAAGGTTCGGTTAGATGTACATTCTGGCCGTTGGAATGTGATCAAGTTTTGTGATGCCCATAATCATGAAATGTTAAACCCCAAATACACAGGGATGCTACCGGTTCATAGGAAATTGAGTGAAGCTGATATCTTGGAGATGAATAACATGCGGAATGCAGGTATTACTACACCTCAAATTTATGGGTCATTTGTCAGCCAATCTGGTGGGTACAACAATGTTGGTTTTCGGAAAAGAGATCTTTACAATGAGATTGGTAGGCAAAGAATGTTGCAGCTAAGTGATGATAAGGGTGCAATTAAGTACCTACGTGAAAGGGAGCAGAATGAAGGGTCAATGTTTTGGAGGCACACGACTGACTCTAAAGGCCGACTCCAACGATTATTTTGGTGTGACGTGATAACAGATGGTGATCTTGCTATGCGGAATGCTATCAAAAGAGTGCTTCCAAATGCACACCACAGGCTTTGTGGATGGCACTTGTGTCGTAATGCTGCCAGTAATGTTAAAAATCCTAAGATGGTTTCGATGTTTAGGAAATGTATGTTGGGTGACTATGAGGTTTCTGAGTTTAAACACAGGTGGGAGGTAATGGTGAAGGAATTTCGACTTGAGGAAAACAATTGGGTGAAGGAAATGTATGAGAAAAAGAGGATGTGGGCCACAGCATACATAAGGGGAAATTTCTTTGCAGGGTTTAGGACAACGTCTCGATGTGAGGGGCTGCATGGGCAACTTGGAAAGTTTGTTCACTCCCGGACCGATTTGGTTGGCTTTCTGAAAAATTATGGCCGTTTCCTTGAAGTACTAGGGTATAATGAGTTAGAAGTTGATTTCGAGTCAGTACGCGGTGATATGGTCCTGGAGACTAACTTGCATGCACTAGAGAGATCAGCCTCTAAGATTTTCACAAAGGAGGTTTTCATATTGTTACGTCCCGCCCTTGCCAGGGGAAGCACTATCAGGGTCATGGGCTGTACACAGCTGATGTCACAAACCATTTTTACAGTGTCTAAGTATGGTAGATCACAGAAGAGGTGGCAAGTGTCATATATTCCAGAACCACTTTTCATTAAATGTTCTTGTCAAAGAATGGAATCCTTTGGACTTCCATGTGATCACATAATTGGTGTGATGGTACACTTGAACATACAAGAGATGCCGAAGTGTCTTGTGCTGAGTAGGTGGACCATGGGTGTGAAGGATAGTGCTTATGATATTAGGGATGGACGTAACTCGATTTGGGATTCTGTGTATGATGCACGTTGTGGTTATTTGGACTTTTTGTGTAAGAAGATGAATAGATTAGGGGGTAGATCTGATACAAGATTCAATGAGATTAAGGACTGGGTTAGCAGTAAAATAAACTTGTATAGTGCATCACATATGAGTAGTGGTGATGGGAATGAAAATGCTACAGATGAAGGTGGTCCAACATTGAAAGATCCAATTAGAGTTGGTTCAAAGGGGTGTGCAGCTGGTTCATCGTCACAAGCAAGAAGACGACCCCATAAATGTAGGCAATGTGGTCTTGTTGGTCACAATCGAACTACTTGCCCAAATAAAAGGAAATATGAGGCTCCTCTTGAGTCGGGAGAGGTACTCTTCAGGGCTGGACAAAGTTGTAGCCGCCCGTGTGAATAG 2058 0.413 MENINENVGENVVGLEEIESEDDGDNAFHYDSRQFVIGVDSEADFVDLNPDLLSEENLKNFNFPNLDVAYNFYNNWYGKMKGFSARKGKERKNAMEEIIEKTYLCHREGKRPINTNEKTGKKKREAKPETRCLCPAKMKVRLDVHSGRWNVIKFCDAHNHEMLNPKYTGMLPVHRKLSEADILEMNNMRNAGITTPQIYGSFVSQSGGYNNVGFRKRDLYNEIGRQRMLQLSDDKGAIKYLREREQNEGSMFWRHTTDSKGRLQRLFWCDVITDGDLAMRNAIKRVLPNAHHRLCGWHLCRNAASNVKNPKMVSMFRKCMLGDYEVSEFKHRWEVMVKEFRLEENNWVKEMYEKKRMWATAYIRGNFFAGFRTTSRCEGLHGQLGKFVHSRTDLVGFLKNYGRFLEVLGYNELEVDFESVRGDMVLETNLHALERSASKIFTKEVFILLRPALARGSTIRVMGCTQLMSQTIFTVSKYGRSQKRWQVSYIPEPLFIKCSCQRMESFGLPCDHIIGVMVHLNIQEMPKCLVLSRWTMGVKDSAYDIRDGRNSIWDSVYDARCGYLDFLCKKMNRLGGRSDTRFNEIKDWVSSKINLYSASHMSSGDGNENATDEGGPTLKDPIRVGSKGCAAGSSSQARRRPHKCRQCGLVGHNRTTCPNKRKYEAPLESGEVLFRAGQSCSRPCE 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi238g00025 685 Pfam FAR1 DNA-binding domain 71 163 IPR004330 -
Sebi238g00025 685 PANTHER OS01G0519700 PROTEIN 271 555 - -
Sebi238g00025 685 MobiDBLite consensus disorder prediction 601 622 - -
Sebi238g00025 685 Pfam SWIM zinc finger 487 521 IPR007527 GO:0008270
Sebi238g00025 685 SUPERFAMILY Retrovirus zinc finger-like domains 624 663 IPR036875 GO:0003676|GO:0008270
Sebi238g00025 685 ProSiteProfiles Zinc finger SWIM-type profile. 473 521 IPR007527 GO:0008270
Sebi238g00025 685 SMART 26again6 496 523 IPR006564 GO:0008270
Sebi238g00025 685 Pfam MULE transposase domain 271 302 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi238g00025 Sebi-Chr238 529970 532523 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Sebi238g00025 FAR1 1.6e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi238g00025 - - tpra:123896136 468.003