Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi238g00024 ATGAATTTTCGGTTTCCATTGAGGAGATATCCAACAGACACTGCTTCACGAAGGGAAGATCAGGAACAATGTGTCAACCAACCTGGGACATCATCAAACAGTGATGACGAAGATGTAAGTAGTGAAGCAGATGAAATCATGGGAGTTCGCGGTGAAGACCTATGGACGACTACACTTACTAAAGCACAGGTGGAAGGCAGGCGGACAGTGGTTATACCGGCGAGGGTTGTGACCTCTTACTTCCACAACAGGCCTAAGAAGTTCAAAGTTAGATTACCAGATGACCATATCAAATCGTGGGAATTGATTTGGAATCGACGAATACCGACGGAGTGCAAAATTGGACATGGTTGGACTGAATTTTGTATGACACGTGGGCTGGAAAAAGGAGACCACATCAGGTTTTGGAAGTTGGAAAATGAAGCCTTCATCAGAATCGTTCGAACAAGATCCTCCACTTAG 462 0.4481 MNFRFPLRRYPTDTASRREDQEQCVNQPGTSSNSDDEDVSSEADEIMGVRGEDLWTTTLTKAQVEGRRTVVIPARVVTSYFHNRPKKFKVRLPDDHIKSWELIWNRRIPTECKIGHGWTEFCMTRGLEKGDHIRFWKLENEAFIRIVRTRSST 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi238g00024 153 MobiDBLite consensus disorder prediction 21 36 - -
Sebi238g00024 153 SMART B3_2 55 150 IPR003340 GO:0003677
Sebi238g00024 153 MobiDBLite consensus disorder prediction 1 43 - -
Sebi238g00024 153 CDD B3_DNA 56 141 IPR003340 GO:0003677
Sebi238g00024 153 SUPERFAMILY DNA-binding pseudobarrel domain 55 149 IPR015300 -
Sebi238g00024 153 Pfam B3 DNA binding domain 55 147 IPR003340 GO:0003677
Sebi238g00024 153 ProSiteProfiles B3 DNA-binding domain profile. 55 152 IPR003340 GO:0003677
Sebi238g00024 153 Gene3D - 33 151 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi238g00024 Sebi-Chr238 528792 529521 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi238g00024 B3 1.1e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi238g00024 - K03168 mof:131151023 38.1206