Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi238g00014 ATGGGAGTTTGTTTGAGCGCCCAAATTAAAGCTGAAAGCCCATATAACACTGGGTTAAATTCAAAGTATGTGAGTACAGATGGAAATGATGTTAGCAGCTCAAACAGTAAGGGTTCGGCTGTGTCGGTGCCTCAGACTCCTCGGAGTGAGGGTGAGATCTTGCAGTCACCCAATTTAAAGAGCTTTACATTAGCAGAACTTAAGACATCCACTAGAAATTTCCGTCCAGACAGTGTGTTAGGAGAAGGTGGTTTTGGATCAGTTTTTAAGGGGTGGATTGATGAGAATTCATTGGCTGCTGCTAAACCTGGCACTGGCATTGTTATTGCTGTGAAAAGACTTAACCAAGATGGATTCCAGGGTCACAGGGAGTGGTTGGCTGAAGTCAACTATCTTGGACAGCTTTCTCATCCTCATTTAGTGAGATTGATTGGGTATTGCCTTGAAGATGAGCACCGCCTTCTTGTCTATGAATTCATGCCCCGTGGAAGCTTGGAGAATCATTTGTTCAGGAGAGGCTCATATTTCCAACCCCTTTCTTGGAGCCTCCGTTTGAAGGTTGCTCTTGATGCTGCCAAAGGGCTTGCATTTCTGCACAGTGCTGAAACAAAAGTGATATATAGAGATTTTAAGACTTCAAATGTCTTGCTGGATTCTGTATGTCATCTTACTACTAAAAGTGATGTCTATAGTTTTGGTGTTGTCCTGCTGGAAATGTTATCTGGTAAGAAGGCAGTTGACAAGAATAGACCAACTGGACAACAAAGCTTGGTGGGATGGGCGAAACCCTACCTGGCTAACAAGCGTAAAGTATTCCGCGTGTTAGACAGCCGACTTGAAGGGCAGTATTCAACAGAGGAGGCCTACAAAGTATCCACCCTTGCTTTGAGATGCCTATCAATAGAATCCAAGTTTAGGCCAAACATGGATGAAGTGGTTAGAACTTTGGAGCAGTTGCAGGTTTCTAATGTAAGTGGAGGTAATCAAAATCCTTCTATTAATGGGTCTCGAGCTCGTAGAAAAAGTGCTGATGATGCTAAACGTGTGAGGACCCCTACATCTTACCCCCGCCCCTCTGCATCCCCTCTCTATAGTTGA 1098 0.4417 MGVCLSAQIKAESPYNTGLNSKYVSTDGNDVSSSNSKGSAVSVPQTPRSEGEILQSPNLKSFTLAELKTSTRNFRPDSVLGEGGFGSVFKGWIDENSLAAAKPGTGIVIAVKRLNQDGFQGHREWLAEVNYLGQLSHPHLVRLIGYCLEDEHRLLVYEFMPRGSLENHLFRRGSYFQPLSWSLRLKVALDAAKGLAFLHSAETKVIYRDFKTSNVLLDSVCHLTTKSDVYSFGVVLLEMLSGKKAVDKNRPTGQQSLVGWAKPYLANKRKVFRVLDSRLEGQYSTEEAYKVSTLALRCLSIESKFRPNMDEVVRTLEQLQVSNVSGGNQNPSINGSRARRKSADDAKRVRTPTSYPRPSASPLYS 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi238g00014 365 Gene3D Phosphorylase Kinase; domain 1 49 159 - -
Sebi238g00014 365 PANTHER OS01G0588500 PROTEIN-RELATED 40 219 - -
Sebi238g00014 365 Gene3D Transferase(Phosphotransferase) domain 1 223 334 - -
Sebi238g00014 365 Gene3D Transferase(Phosphotransferase) domain 1 160 222 - -
Sebi238g00014 365 MobiDBLite consensus disorder prediction 18 52 - -
Sebi238g00014 365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Sebi238g00014 365 MobiDBLite consensus disorder prediction 323 337 - -
Sebi238g00014 365 FunFam Serine/threonine-protein kinase BIK1 41 159 - -
Sebi238g00014 365 ProSitePatterns Protein kinases ATP-binding region signature. 80 112 IPR017441 GO:0005524
Sebi238g00014 365 ProSiteProfiles Protein kinase domain profile. 74 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi238g00014 365 MobiDBLite consensus disorder prediction 323 365 - -
Sebi238g00014 365 SUPERFAMILY Protein kinase-like (PK-like) 51 318 IPR011009 -
Sebi238g00014 365 Pfam Protein tyrosine and serine/threonine kinase 78 219 IPR001245 GO:0004672|GO:0006468
Sebi238g00014 365 Pfam Protein tyrosine and serine/threonine kinase 222 316 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi238g00014 Sebi-Chr238 188592 190883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi238g00014 52 316 Glycoside Hydrolase AT3G07070 38.889 6.14e-69 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Sebi238g00014 PK_Tyr_Ser-Thr 3.6e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi238g00014 - - gmx:100798404 605.905