Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi238g00007 ATGGCAGACACTGAGGATATTCAGCCACTCGTCTGTGATAATGGAACGGGAATGGTTAAGGCTGGATTTGCTGGAGATGATGCTCCAAGGGCCGTGTTTCCTAGCATTGTTGGTCGTCCACGTCACACTGGTGTGATGGTTGGCATGGGCCAAAAGGATGCATATGTTGGGGATGAAGCTCAGTCCAAACGTGGTATTTTGACTCTGAAATATCCTATTGAGCATGGTATTGTCAGTAACTGGGATGACATGGAGAAGATCTGGCATCATACCTTCTACAATGAACTCCGTGTGGCCCCAGAGGAGCACCCAGTTCTGCTCACTGAAGCACCCCTCAACCCAAAGGCTAATCGTGAGAAAATGACTCAAATTATGTTTGAGACCTTCAACACACCTGCTATGTATGTTGCTATCCAAGCTGTCCTATCCCTCTATGCCAGTGGCCGTACAACTGGTATTGTTTTGGACTCTGGAGATGGTGTGAGCCACACTGTGCCCATTTATGAAGGGTATGCCCTCCCTCATGCCATCCTGCGTCTTGACTTAGCAGGGCGTGACCTCACTGATGCCTTGATGAAAATCCTTACTGAGCGTGGTTATTCCTTCACTACCACAGCCGAGCGTGAAATTGTAAGGGATATGAAGGAAAAACTGGCTTATATTGCCCTTGATTATGAGCAAGAGCTTGAAACTTCAAAAACCAGCTCTGCTGTTGAGAAGAGCTATGAGCTGCCTGATGGACAGGTCATCACCATTGGTGCTGAGAGATTCCGTTGTCCTGAAGTCCTCTTCCAGCCATCCATGATTGGAATGGAAGCTGTTGGTATTCATGAGACAACATACAATTCAATTATGAAGTGTGATGTTGATATCAGAAAGGATTTGTATGGAAACATAGTCCTCAGTGGAGGTTCTACCATGTTCCCTGGTATTGCTGACAGAATGAGCAAGGAAATCACCGCTTTGGCCCCAAGCAGCATGAAAATCAAGGTGGTTGCTCCACCTGAGAGAAAGTACAGTGTCTGGATTGGTGGCTCTATCTTGGCTTCTCTCAGCACTTTCCAACAGGAAATGCTTTTAAATGCTGCAGAATGGCTTGGTGTAGGTACGGTGTCCTGGTTTGGCAAAGCAATAGCACCTTGCAACGACTGGTGA 1155 0.4693 MADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAVGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQEMLLNAAEWLGVGTVSWFGKAIAPCNDW 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi238g00007 384 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Sebi238g00007 384 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Sebi238g00007 384 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Sebi238g00007 384 SMART actin_3 7 378 IPR004000 -
Sebi238g00007 384 PANTHER ACTIN 9 366 IPR004000 -
Sebi238g00007 384 FunFam Major actin 260 340 - -
Sebi238g00007 384 Gene3D - 140 340 - -
Sebi238g00007 384 FunFam Actin, alpha skeletal muscle 36 73 - -
Sebi238g00007 384 FunFam Actin, alpha skeletal muscle 3 177 - -
Sebi238g00007 384 FunFam Actin, muscle 182 273 - -
Sebi238g00007 384 PRINTS Actin signature 63 85 IPR004000 -
Sebi238g00007 384 PRINTS Actin signature 142 161 IPR004000 -
Sebi238g00007 384 PRINTS Actin signature 28 37 IPR004000 -
Sebi238g00007 384 PRINTS Actin signature 51 62 IPR004000 -
Sebi238g00007 384 PRINTS Actin signature 117 130 IPR004000 -
Sebi238g00007 384 PRINTS Actin signature 238 254 IPR004000 -
Sebi238g00007 384 Pfam Actin 5 359 IPR004000 -
Sebi238g00007 384 SUPERFAMILY Actin-like ATPase domain 149 369 IPR043129 -
Sebi238g00007 384 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Sebi238g00007 384 Gene3D Actin; Chain A, domain 4 182 273 - -
Sebi238g00007 384 Gene3D - 10 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi238g00007 Sebi-Chr238 86119 88153 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi238g00007 1 365 Cytoskeleton Gene Families AT5G09810 94.795 0.0 717