Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi237g00019 ATGGCTCTCTTCACCTCTGCTTCTTTCTGTAATCAAACCAAAAAGACCTTCTTTTCAATATTCATCGTTTTCACTCTGTTCCATTCACTCTACAACACTGTAGAGTCAATGTCCTTCAACTTTTCTAGTTTCAACACAAACTTATATCTAATAAAGTTCGAAGGTGATGCCTTTTCCTCAAGGGGTGTCCTGCAGCTCACAAAGAACCAACTTGATGGCCCCATCACAAGCAGCGTTGGTCGAGCCTCGTTTGATCAACCAGTGAAGCTTTGGGATAGAGGAACAAAGGAGCTCACGGACTTCACAACCCATTTCTCTTTTGTTATGAGAGCCGTTGATCAAACACAAGTTGGTGATGGGTTATCCTTCTTCATTGCACCATTTCAATCTGAAATCCCAACCAATTCATCTGGTGGGTACCTTGGTCTTTTCAACAAGGAAGATGCATTCAACACTAGCAAAAATCAAATAGTTGCAGTTGAGTTTGATAGTTTTAAGAACGATTGGGATCCAAGCTCTGATCATGTAGGAATCAATGTTAACTCCATTCAATCAGTTACAAATGTGACATGGAAGAGTAACATTAAGAATGGGTCAATTGCTAATGCTTGGATTTCATATAACTCTACCACAAAAAATCTTTCTGTTTACCTTACTTATGCCAATAATCCAAGCTTTGATGGTCAATGGATTGAAATACACAACATTCTATCTTGGCCTGCTATGGTTCACCTTATGGAGAAAAGAAAAGGGCCTAATGGGGGAGAAGAGGACAATACAGGTTTTGATGCTTCTATGGATGATGAATTTGAGAGAGGAACTGGTCCAAAAAGGTTCACTTACAGGGAACTAAGCAATGCAACAAACAGCTTTGCAGAAACAGGAAAGCTTGGAGAAGGAGGATTTGGAGGTGTTTACAAAGGTTTTCTTGGTAACCCCAACCATGAAATTGCAGTGAAAAGGATTTCAAAAGGATCTAAACAAGGAAAAAAGGAATACATATCAGAGGTGAGAATAATTAGCCGTTTGAGACATAGAAATTTGGTTCAACTCATAGGGTGGTGCCATGAGCAAGGTGAGCTGCTTCTTGTTTATGAATATATGCCTAATGGAAGCCTTGATTCCCATCTATTTGGAAATGGGGTGATGCTTACCTGGATAGTGAGGTACAAAGTAGCCTTAGGTTTGGCATCTGCTCTTCTTTATCTTCATGAAGAGTGGGAGCAATGTGTGGTGCATAGAGATATTAAGTCAAGTAATGTCATGTTGGATGCAAATTTCAATGCCAAGCTTGGTGATTTTGGTCTTGCAAGGCTGGTTGACCATGAACTTGGCTCTCAAACTACTGTTTTGGCAGGCACAATGGGGTACCTAGCACCAGAGTGTGTGACCACAGGGAAATCTAGTAAGGAATCTGATGTTTATAGCTTTGGTGTTGTTGCACTTGAAATCACATGTGGTAGGAGACCAGTTGAAGTGAAACAAGAGCCTGGTAAAGTTAGGCTTGTAGAGTGGGTGTGGGATCTCTATGGAAAAGGGAAACTTGCTGAAGCAGCTGATGAGAGGCTAAGTTTGGAATTTGATGAGAAGCAAATGGAATGCTTGATGGTAGTTGGGTTGTGGTGTTGTCATCCTGATCATACAATGAGGCCATCTATTAGGCAAGTGATAAATGTCCTCAATTTTGAAGCTCCTTTGCCTAGTCTTCCAGCAAAGTTGCCTGTGCCAATGTACTTTGCACCTCCCATGGATATGTGCAGATTCTCCTACAATACATCTGGCCTCACAACCACAACCAAAGGATCTTCCTACTCATCAATGTCAGCGGGGTCTAGAAAATCTCTATTATAG 1851 0.4111 MALFTSASFCNQTKKTFFSIFIVFTLFHSLYNTVESMSFNFSSFNTNLYLIKFEGDAFSSRGVLQLTKNQLDGPITSSVGRASFDQPVKLWDRGTKELTDFTTHFSFVMRAVDQTQVGDGLSFFIAPFQSEIPTNSSGGYLGLFNKEDAFNTSKNQIVAVEFDSFKNDWDPSSDHVGINVNSIQSVTNVTWKSNIKNGSIANAWISYNSTTKNLSVYLTYANNPSFDGQWIEIHNILSWPAMVHLMEKRKGPNGGEEDNTGFDASMDDEFERGTGPKRFTYRELSNATNSFAETGKLGEGGFGGVYKGFLGNPNHEIAVKRISKGSKQGKKEYISEVRIISRLRHRNLVQLIGWCHEQGELLLVYEYMPNGSLDSHLFGNGVMLTWIVRYKVALGLASALLYLHEEWEQCVVHRDIKSSNVMLDANFNAKLGDFGLARLVDHELGSQTTVLAGTMGYLAPECVTTGKSSKESDVYSFGVVALEITCGRRPVEVKQEPGKVRLVEWVWDLYGKGKLAEAADERLSLEFDEKQMECLMVVGLWCCHPDHTMRPSIRQVINVLNFEAPLPSLPAKLPVPMYFAPPMDMCRFSYNTSGLTTTTKGSSYSSMSAGSRKSLL 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi237g00019 616 FunFam Lectin-domain containing receptor kinase A4.3 368 580 - -
Sebi237g00019 616 Pfam Protein kinase domain 292 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi237g00019 616 FunFam L-type lectin-domain containing receptor kinase IX.1 276 367 - -
Sebi237g00019 616 Gene3D - 34 250 - -
Sebi237g00019 616 Gene3D Transferase(Phosphotransferase) domain 1 368 580 - -
Sebi237g00019 616 SUPERFAMILY Protein kinase-like (PK-like) 275 587 IPR011009 -
Sebi237g00019 616 CDD STKc_IRAK 305 561 - -
Sebi237g00019 616 ProSitePatterns Legume lectins beta-chain signature. 158 164 IPR019825 -
Sebi237g00019 616 ProSitePatterns Protein kinases ATP-binding region signature. 297 320 IPR017441 GO:0005524
Sebi237g00019 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 411 423 IPR008271 GO:0004672|GO:0006468
Sebi237g00019 616 ProSiteProfiles Protein kinase domain profile. 291 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi237g00019 616 Gene3D Phosphorylase Kinase; domain 1 276 367 - -
Sebi237g00019 616 SMART serkin_6 291 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi237g00019 616 PANTHER - 59 567 - -
Sebi237g00019 616 SUPERFAMILY Concanavalin A-like lectins/glucanases 35 240 IPR013320 -
Sebi237g00019 616 Pfam Legume lectin domain 37 222 IPR001220 GO:0030246
Sebi237g00019 616 CDD lectin_legume_LecRK_Arcelin_ConA 38 239 IPR001220 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi237g00019 Sebi-Chr237 1071112 1073144 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi237g00019 34 578 Receptor kinase-like Gene Family AT5G10530 47.021 0.0 528
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Sebi237g00019 Pkinase 3.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi237g00019 - - gmx:100791518 947.962