Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi236g00056 ATGGATATACTTCAGCTGAGCATAACCAAGGTGCCTTTTGTTCTCATTGATGTTGGACAGCGGCCAAATACTGAATATGTGATTGTTAACTTAGATGGATCAAGACATCCTTTACCTCTGACAACAGTTTATCATAAATTGCAACCAATAAATGCTTCTCCTTATACTTTCTTGCAAGCACTTTTTGGGCACGAATATCCGGTTGGACTACTAGATGAAGAGAAAATTCTTCCCTTGGGGAAGGATATTAGTGCTGTAGGCCTTTGCAGTTTAAGAAATGGAATTGCTGAAATTAAGTCATGCGAAGATCTACCGTATTTTCTGTCTGACTTGAGTAAAGATCAGATGATTGTAGATCTTTCCTTCAAAACGAAAATACTGTTTTGGAGTGGTATTCTTCTTGGTTCAATGTCTGTTGGGATCCTTGGCTATGCGGTTGTGAGGAACTGTAATAAGTGGAAACAGTGGAAGCAACAGAGGCAGCTCCAGCAACAAAGGCAAACAGTCAGTGGTGATTTTGATCCTCAGCTGGATGACGAGATTGAAAATGTTCCAGACGGACAATTATGTGTTATATGCCTGATGAGGAGAAGGCGTTCTGTTTTCATCCCATGTGGGCATCTAGTATGTTGCCAAGGGTGTGCCATATCAGTTGAACGTGAAGTAGCACCGAAGTGTCCTGTCTGTCGTCAGGAGATTCGAGATTCTGTGCGGATTTTTGAATCTTGA 729 0.4143 MDILQLSITKVPFVLIDVGQRPNTEYVIVNLDGSRHPLPLTTVYHKLQPINASPYTFLQALFGHEYPVGLLDEEKILPLGKDISAVGLCSLRNGIAEIKSCEDLPYFLSDLSKDQMIVDLSFKTKILFWSGILLGSMSVGILGYAVVRNCNKWKQWKQQRQLQQQRQTVSGDFDPQLDDEIENVPDGQLCVICLMRRRRSVFIPCGHLVCCQGCAISVEREVAPKCPVCRQEIRDSVRIFES 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi236g00056 242 CDD RING-HC_SPL2-like 185 231 - -
Sebi236g00056 242 ProSiteProfiles Zinc finger RING-type profile. 190 230 IPR001841 -
Sebi236g00056 242 SMART ring_2 190 229 IPR001841 -
Sebi236g00056 242 Pfam E3 Ubiquitin ligase 9 141 IPR022170 GO:0004842|GO:0006996|GO:0016567
Sebi236g00056 242 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 7 242 IPR044247 GO:0004842
Sebi236g00056 242 SUPERFAMILY RING/U-box 185 235 - -
Sebi236g00056 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 175 242 IPR013083 -
Sebi236g00056 242 Pfam Zinc finger, C3HC4 type (RING finger) 188 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi236g00056 Sebi-Chr236 809213 811237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi236g00056 187 239 C3H Transcription Factor Family AT3G06140 39.623 1.71e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi236g00056 K15688 - gmx:100800058 413.69