Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi236g00032 ATGCAGAATCACAGGCTGAAGCAGCAGCAACAGCAAGCTCTGATGCAACAAGCTCTTCTTCAACAACAGTCTCTCTATCACCCCGGTCTCCTAGCTCCTCCTCCTCAGGTTGGGCCCCCTACTTACCCCTTTCTCTCCATTTTCGATCATTTCTTCGATCTTCTTCTGTTTTTCCTTCCTTTGGCAGTGTCGATCTTCGAGTCCTTGCATTTATGCATATTGGGGATTGCTGGAACGTCTAGGATTGAACCAATCCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTTCTTGCCGCAGTGTGTATGTGGGGAACATCCATACACAGGTAACTGAGCCGCTTTTGCAAGAAGTTTTCGCAGGTACTGGCCTAGTTGAAAGTGTTAAACTTTTTAGAAAGGAGAAGTCATCCTATGGATTCATTCATTATTTTGATCGGAGATCTGCTGCTCTTGCCATATTATCTCTCAATGGAAGGCATCTATTTGGGCAGCCTATCAAAGTTAACTGGGCATATGCTAGTGGTCAGAGAGAGGATACATCAGGCCATTACAACATATTTGTTGGTGATCTCAGTCCTGAGGTTACTGATGCTACGTTGTTCGCATGCTTTTCTGTCTACCCCAGTTGTTCAGATGCAAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGGGGATTTGGATTTGTCTCATTCCGTAATCAACAGGATGCTCAAAGCGCTATAAATGATTTGACCGGTAAGTGGCTTGGAAGTAGACAAATACGCTGCAACTGGGCAACAAAAGGTGCTGGTGGCAATGAAGAGAAGCAAAACTCAGACACCAAAAGTGTTGTCGAACTGACAAATGGTTCATCTGAAGATGGAAAAGAGACATCTAACAGTGATGCTCCTGAGAACAATCCTCAATATACTACTGTTTATGTGGGTAACCTTGGTTCAGAGGTAACACAGCTTGATCTCCATCGCCACTTCCATTCTCTTGGAGCTGGAGTAATAGAGGAGGTTCGTGTTCAGCGTGATAAAGGGTTTGGTTTTGTGAGGTACAGTACTCATGCTGAAGCAGCTCTGGCTATTCAGATGGGGAATTCCCAGTCGATTCTCTGTGGCAAACAAATTAAGTGCTCGTGGGGGAGCAAGCCTACACCACCTGGAACTGCTTCAAATCCTCTTCCCCCACCTGCTGCTGTATCTCTGCCAGGACTCTCTACCGATCTTTTGGCCTATGAGCGACAGCTAGCAATGAGCAAGATGGGTGGTGTCCATACCTTGATGCATCCTCAAGGCCAACATCCCCTTAAACAGGCAGCAATTGGAGCAAGCCAAGCAATATATGATGGTGGGTTCCAGAATGTTGCAGCTGCACAGCAAATGATGTACTACCAGTAA 1392 0.4612 MQNHRLKQQQQQALMQQALLQQQSLYHPGLLAPPPQVGPPTYPFLSIFDHFFDLLLFFLPLAVSIFESLHLCILGIAGTSRIEPIPSGNLPPGFDPSSCRSVYVGNIHTQVTEPLLQEVFAGTGLVESVKLFRKEKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGNEEKQNSDTKSVVELTNGSSEDGKETSNSDAPENNPQYTTVYVGNLGSEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNSQSILCGKQIKCSWGSKPTPPGTASNPLPPPAAVSLPGLSTDLLAYERQLAMSKMGGVHTLMHPQGQHPLKQAAIGASQAIYDGGFQNVAAAQQMMYYQ 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi236g00032 463 SUPERFAMILY RNA-binding domain, RBD 85 178 IPR035979 GO:0003676
Sebi236g00032 463 SMART rrm1_1 307 377 IPR000504 GO:0003723
Sebi236g00032 463 SMART rrm1_1 186 259 IPR000504 GO:0003723
Sebi236g00032 463 SMART rrm1_1 101 170 IPR000504 GO:0003723
Sebi236g00032 463 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 168 IPR000504 GO:0003723
Sebi236g00032 463 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 308 374 IPR000504 GO:0003723
Sebi236g00032 463 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 257 IPR000504 GO:0003723
Sebi236g00032 463 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 174 IPR000504 GO:0003723
Sebi236g00032 463 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 263 IPR000504 GO:0003723
Sebi236g00032 463 Gene3D - 1 182 IPR012677 -
Sebi236g00032 463 FunFam oligouridylate-binding protein 1-like isoform X2 183 278 - -
Sebi236g00032 463 FunFam Oligouridylate-binding protein 1C 283 385 - -
Sebi236g00032 463 SUPERFAMILY RNA-binding domain, RBD 296 388 IPR035979 GO:0003676
Sebi236g00032 463 Gene3D - 286 385 IPR012677 -
Sebi236g00032 463 MobiDBLite consensus disorder prediction 263 306 - -
Sebi236g00032 463 Gene3D - 183 285 IPR012677 -
Sebi236g00032 463 MobiDBLite consensus disorder prediction 266 306 - -
Sebi236g00032 463 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 98 384 - -
Sebi236g00032 463 SUPERFAMILY RNA-binding domain, RBD 179 269 IPR035979 GO:0003676
Sebi236g00032 463 CDD RRM2_PUB1 184 263 - -
Sebi236g00032 463 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 381 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi236g00032 Sebi-Chr236 433648 437982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi236g00032 95 382 Eukaryotic Initiation Factors Gene Family AT4G34110 28.713 2.46e-21 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi236g00032 K13201 - gmx:100781227 757.288