Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi236g00025 ATGGCGACCAAAGAGATGCTCGGAATTAGCAGCGGATCAGGATCCGACCCGGATTCAGACTGGGACGACTCGGAAGGGGACCCCGATTACAACATGCTCGAAGAAATCCATAGCAACTTCTCGAACCTCTCACTCAAGAACAAGGCGAAGCCGCGCGTTGCTGAAGGTAAGGGTCTGGCCACTGAGATAGACCCAGAGGTGCTGGAGATAACAGCACCTTCTTTTGATGATGAGAATTTTGAAAGAGTTCAGAAAACAATAGAAGCGGGACAGCTAGAGAAATTGAAAGTGGACGAATGCAAACTGTATCTGAGGAAGAATGGTCTGAGGCTAACTGGAAATAAGGACACACTCATCCAGCGTATAAAGGAGCATCTAGAGATTATAAATGGTGGAGGGGAGAAAAAGTACCCGCCTTGCAGCTTTGTGTTGAATTGTAGAGGTGATGCATGCACGGGTGATGTTGTTTTGTTTGAGCAAAATGTCTATGAAATGTTCAGCATAGTATCTAGGAGTGCCAGTGGTCCACCTTGTGGCAAAAGGATCATTGCAGGCCGCATAGTGAAGGAAAGCTATGGTAGTGCCAAACAACAGCATACATTTACGATTGAAGTACTCTGGAGCAAAGGAGAAAAGCCTCTACCTCCCCTTTGCCAACTACTGATTAAGGGTCGAAACCTTTATAGGTTGAAGACTTTGAGACAGAAATGGGAGGATGAAGGGAAAAGGCAGAAAACATTGATGGAAAAACACTCAAGAGGATCCATTGCCAGGGCAGATAGAGAAGCAAGGATACAAGAAAAGGAGAAGGGAAAAAATATTATGAAAAATAGGATCTCCAAAAAGAATTCAGTAAGGAACCAATGTCAATCACATTCAGGCATTGTGGTGTCACAATATCAACCTCAAAAAACAGAAATAGCCATTTATCCAGAAAAGCCAGAATTTACATCTCAAAATTCAGGTTTACTGGCCAATACAACAAAACAAACATCTGCTATTATAAATAAACCAGCAGCTGTAACTGAACAGCATGGTATGTATGTTCACCATATACATAATCAGCAAACTGGGAAGCGCTCAGCTGAATTTGGTGAGAAATACCACCACCCTTTCACTGACTTCCAATCCAGAGAAAATGCAAATGTCATTGAGAAATACCACTCTTTCATTGCTGAGACAAACGGATTTACAGAGATGACTTATCATAGGAAGCCTTTGGCAACTGCAAATCACTTTCATCCATTGATGCCCGTGGGAGGTGCTATAAGCAGAGAAAGCTATATGCAGAGACAGTTGTGTAGACATTATTCCCGTGGGAGGTGCTATTTTGGGGACAACTGCAAATTCTTACATGATTTGAGAAACAAAGGGAATGCATGA 1383 0.4273 MATKEMLGISSGSGSDPDSDWDDSEGDPDYNMLEEIHSNFSNLSLKNKAKPRVAEGKGLATEIDPEVLEITAPSFDDENFERVQKTIEAGQLEKLKVDECKLYLRKNGLRLTGNKDTLIQRIKEHLEIINGGGEKKYPPCSFVLNCRGDACTGDVVLFEQNVYEMFSIVSRSASGPPCGKRIIAGRIVKESYGSAKQQHTFTIEVLWSKGEKPLPPLCQLLIKGRNLYRLKTLRQKWEDEGKRQKTLMEKHSRGSIARADREARIQEKEKGKNIMKNRISKKNSVRNQCQSHSGIVVSQYQPQKTEIAIYPEKPEFTSQNSGLLANTTKQTSAIINKPAAVTEQHGMYVHHIHNQQTGKRSAEFGEKYHHPFTDFQSRENANVIEKYHSFIAETNGFTEMTYHRKPLATANHFHPLMPVGGAISRESYMQRQLCRHYSRGRCYFGDNCKFLHDLRNKGNA 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi236g00025 460 MobiDBLite consensus disorder prediction 1 17 - -
Sebi236g00025 460 SUPERFAMILY CCCH zinc finger 429 453 IPR036855 GO:0046872
Sebi236g00025 460 PANTHER SAP DOMAIN-CONTAINING PROTEIN 23 455 - -
Sebi236g00025 460 Pfam SAP domain 92 126 IPR003034 -
Sebi236g00025 460 SMART sap_9 92 126 IPR003034 -
Sebi236g00025 460 SMART c3hfinal6 429 454 IPR000571 GO:0046872
Sebi236g00025 460 MobiDBLite consensus disorder prediction 1 31 - -
Sebi236g00025 460 Pfam CCCH-type zinc finger 433 453 IPR041367 -
Sebi236g00025 460 Gene3D - 423 459 - -
Sebi236g00025 460 Gene3D SAP domain 78 138 IPR036361 -
Sebi236g00025 460 ProSiteProfiles SAP motif profile. 92 126 IPR003034 -
Sebi236g00025 460 ProSiteProfiles Zinc finger C3H1-type profile. 428 455 IPR000571 GO:0046872
Sebi236g00025 460 SUPERFAMILY SAP domain 82 127 IPR036361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi236g00025 Sebi-Chr236 373035 376484 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sebi236g00025 SAP 8.9e-10 CL0306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi236g00025 - - lja:Lj3g3v2576220.1 592.038