Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi236g00022 ATGGCTGATTCTTCCTTTGAGATTGATTCCTACTCCTCAAGCCACCAGAGACGACACAATCCAACGCCAGTGAGTTATCGCAGTGTTTCTGGCTCTAGCTCCTTCATACCATCAAGCTCTCGAAGCAATGTCACTTCCAGAACAAGAGCAGCTCGTCGAAACAGAGTTCCTGCCACACCCTTTGCTTCAGATGATGACCATTCATGGCAAGGAGAGGTTTCATGGAAGTTTGAGGCCACTGGGTGGCGTGATTATAGCACAAACTTTGGTTCTGTTCTGAGTCCATGGCCAACCAGCTCCCCATCTGATCACAGTCGTGTGTTTCATCAATCAGCAAATGACTATTACCTTTCTCGAACAAGTGGGTTCAGAGGCCTCACAAACTCATCCTATGAACATTCTTCCTATGGAAGAGTTGAACTTTGGAGCCATGTTGCTAGGGACAATGATCATAGTTACTTTGATCCTCATAGTCAGCCTCGTGGGTTCTCAAAATTGGGGATCATCAAAGAGGGGAGTATTGGAAAAGGGGCTCTCATAAATGGAGGATCACTTCCTTGGTATTCTTATCTTTTTGGAGAATTGGTCAATAAGCTTTCAGGAGCAAACAATGACAAAAACCAAATGATGAATGATGTAGAGAAGATATGCAAATTTATGACCGGGTTAGCTGCAGTTGTGGTAGTTGGAGCATATTTGCAGATAACATGTTGGAGGTTAGTGGGAGAGCGATCTGCTCAGAGAATCAGAACGGAGTATTTAAGAGCGGTTCTTCGACAGGACATAAGTTTTTTTGATACAGACATCAATACTGGGGATATTATGCATGGAATTGCTAGTGATGTTGCACAAATTCAAGAAATGGCCCACTTCATCCATCATGTATTTACATTCATATGTGGGTACGCAGTTGGGTTTAGAAGATCATGGAAAGTCTCTCTGGTGGTATTCTCAGTCACCCCATTAACAATGTTCTGTGGTATCGCTTATAAAGCACTTTATGGTGGTCTAACAGCAAAAGAAGAAGCTTCTTACAGGACAGCTGAAAGCCAATTGGCTGAAAAATATGATGAACTACTTCAAAAATCAGCCCCAATTGGTGCAAAACTTGGTTTTGCTAAGGGTGCAGGCATGGGTGTTATCTATTTAGTAACCTATTCAACATGGGCCTTGGCTTTCTGGTATGGCTCTATCTTAATTTCCAAGAATGAACTTAGTGGAGAGAGAATCCCTGAGATTGATCCCTATAGTCCTGAGGGTAGGAAGCTTTCTTCTGTTCGTGGAAGGATTGAGTTAAAAAATGTTAGTTTTGCATACCCATCTCGTCCTGATTCTCTCATACTTAACAACCTTAATTTGGTATTTCCATCTTCAAAAACTTTGGCATTGGTTGGTGCAAGTGGAGGTGGCAAATCCACTATCTTTGCTCTCATAGAGAGATTTTATGACCCTATTGAAGGGATTATCACCTTGGATGGTCATGATTTGAGGACACTACAAGTAAAATGGGTGAGAGATCAGATTGGGATGGTTGGTCAGGAGCCAATTCTCTTTGCCACATCTATACTGGAAAATATAATGATGGGGAAAGATAATGCCACCAAGGAAGAGGCAATTTCTGCTTGCATTGCTGCTGATGCTCATAACTTCATCTCTACCCTACCACTAGGCTATGACACTCAGGTTGGAGACAGGGGTACAAAACTTTCAGGAGGTCAAAAGCAGCGAATTGCATTGGCTCGTGCAATGATCAAAGATCCTAAAATCCTTCTTTTAGATGAACCTACTAGTGCTCTTGATGCTGAGTCAGAGTCTGCAGTTCAAAGGGCCATTGACAAGATTTCTGCAGGCAGAACAAGCATTGTCATTGCTCACAGGATAGCAACTGTGAAGAATGCTCATGCCATTGTAGTTCTTGAACATGGTTGTGTCAGTGAGATTGGTGACCATCGCCAGCTTATGGGGAAAGCTGGAACCTACTACAACCTTGTCAAGCTTGCTACTGAAGCCATTTCAAAACCTCTCTCTCAAGAAAATGGCATGCAAAAAACCAATGATTTATCCATCTATGATAAATCTGCTCCTGATGTATCAAGATCAAGATATGTAGTTGATATCTCAAGGCCTAAAGACTTAAAATCTACACTGGAGGAGAAACAAGAAGAGATGGAAGATAAGCAAAATAAAAAGCCAAGGAAATACAGACTTTCTGAGGTATGGAAACTGCAAAAACCAGAGGTTGTGATGCTATTTTTAGGATTTCTTCTGGGAATGTTAGCAGTTTCCATGACAGGACAACAAGGTTTGTGTGGTTGGGCTGGATCAAAGCTGACACTGAGGGTTAGAAACCTCTTGTTTCAATCCATACTGAAACAAGAACCTGGGTGGTTTGATTTTGATGAAAACTCCACTGGAGTATTAGTGTCAAGGCTTTCAATAGACTCAGTTACTTTTCGATCAGTATTTGGTGATCGATTTTCAGTCCTTCTTATGGGGTTGAGTTCAGCTGCTGTTGGCCTTGGTGCATCCTTTGCCTTTAATTGGAAACTAACCCTTGTGGCAGCTGCTGTAACTCCTTTAACTCTTGGTGCAAGTTACATAAGCTTGATCATAAATGTTGGACCACAAGTTGATAACAACTCTTATGCCAGAGCTAGCAATATTGCTTCTGGTGCAGTGTCAAACATAAGGACAGTTACTACATTTTCTGCACAGGAACAAATAGTTAAGTCCTTTGATAGAGCCTTGTCAGAACCTAGGAGAAAAGCATTGAGAAGTTCACAACTTCAAGGTCTTATATTCGGGTTCTTTCAAGGTGCCATGTATGGAGCATACACCTTAACTCTTTGGTTTGGTGCTTACCTTGTAAAACATGACAAAGCAGATTTTGAAGACGTGTATAAGATTTTTCTCATTCTTGTTTTGAGCTCATTTTCTGTTGGACAACTAGCTGGTTTAGCACCAGATACTTCTATGGCAGCTACAGCAATTCCTGCAGTTCTAGATATCATGAACCGAAGGCCATTGATAGGCAATGATAGAACAAAAAGTAGGAAAGTAGAAAGATCAAAGGCATTCCAAGTAGAATTCAAAATGGTGACTTTTGCATATCCATGTAGGCCTGAGGTAACTGTGTTGAGGGATTTCTGTTTGAAGGTTAAAGGTGGAAGCACAGTGGCCTTGGTGGGGCCAAGTGGATCAGGAAAATCAACAGTCATATGGCTTACACAAAGATTCTATGATCCAGATCAAGGGAAGGTGTTGATGAGTGGGGTAGATTTGAGGGAGATTGATTTGAAGTGGTTGAGGAGGCAAATAGCTTTGGTGGGTCAAGAACCTGCATTGTTTGCTGGGAGCATAAGGGATAATATTGCATTTGGAGACCCAAATGCTTCATGGGCTGAAATTGAAGCAGCTGCAAAGGAGGCTTACATTCACAAATTCATCAGTGGCCTTCCTCAGGGTTATGAAACCCAGGTTGGTGAAAGTGGGGTCCAGTTATCAGGTGGGCAGAAACAAAGAATTGCTATAGCAAGAGCCGTATTGAAGAAATCAAAGGTGCTTCTGCTTGATGAAGCAAGCAGTGCCTTGGACTTGGAATCAGAGAAACACATCCAAGATGCCCTTAAGAAAGTTTCTAAAGAAGCAACAACCATAATAGTTGCCCATCGTCTTTCCACAATCAGAGAAGCTGACAAGATAGCTGTTATGAGAGATGGGGAAGTGGTGGAGTATGGGAGCCATGAAACTCTCATGGCTTCCATTCAAAATGGTTTGTATGCTAGCCTAGTTCGAGCTGAGACTGAAGCCAATGCCTTTTCTTGA 3825 0.4204 MADSSFEIDSYSSSHQRRHNPTPVSYRSVSGSSSFIPSSSRSNVTSRTRAARRNRVPATPFASDDDHSWQGEVSWKFEATGWRDYSTNFGSVLSPWPTSSPSDHSRVFHQSANDYYLSRTSGFRGLTNSSYEHSSYGRVELWSHVARDNDHSYFDPHSQPRGFSKLGIIKEGSIGKGALINGGSLPWYSYLFGELVNKLSGANNDKNQMMNDVEKICKFMTGLAAVVVVGAYLQITCWRLVGERSAQRIRTEYLRAVLRQDISFFDTDINTGDIMHGIASDVAQIQEMAHFIHHVFTFICGYAVGFRRSWKVSLVVFSVTPLTMFCGIAYKALYGGLTAKEEASYRTAESQLAEKYDELLQKSAPIGAKLGFAKGAGMGVIYLVTYSTWALAFWYGSILISKNELSGERIPEIDPYSPEGRKLSSVRGRIELKNVSFAYPSRPDSLILNNLNLVFPSSKTLALVGASGGGKSTIFALIERFYDPIEGIITLDGHDLRTLQVKWVRDQIGMVGQEPILFATSILENIMMGKDNATKEEAISACIAADAHNFISTLPLGYDTQVGDRGTKLSGGQKQRIALARAMIKDPKILLLDEPTSALDAESESAVQRAIDKISAGRTSIVIAHRIATVKNAHAIVVLEHGCVSEIGDHRQLMGKAGTYYNLVKLATEAISKPLSQENGMQKTNDLSIYDKSAPDVSRSRYVVDISRPKDLKSTLEEKQEEMEDKQNKKPRKYRLSEVWKLQKPEVVMLFLGFLLGMLAVSMTGQQGLCGWAGSKLTLRVRNLLFQSILKQEPGWFDFDENSTGVLVSRLSIDSVTFRSVFGDRFSVLLMGLSSAAVGLGASFAFNWKLTLVAAAVTPLTLGASYISLIINVGPQVDNNSYARASNIASGAVSNIRTVTTFSAQEQIVKSFDRALSEPRRKALRSSQLQGLIFGFFQGAMYGAYTLTLWFGAYLVKHDKADFEDVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLDIMNRRPLIGNDRTKSRKVERSKAFQVEFKMVTFAYPCRPEVTVLRDFCLKVKGGSTVALVGPSGSGKSTVIWLTQRFYDPDQGKVLMSGVDLREIDLKWLRRQIALVGQEPALFAGSIRDNIAFGDPNASWAEIEAAAKEAYIHKFISGLPQGYETQVGESGVQLSGGQKQRIAIARAVLKKSKVLLLDEASSALDLESEKHIQDALKKVSKEATTIIVAHRLSTIREADKIAVMRDGEVVEYGSHETLMASIQNGLYASLVRAETEANAFS 1274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi236g00022 1274 Gene3D ABC transporter type 1, transmembrane domain 994 1271 IPR036640 GO:0005524|GO:0016020
Sebi236g00022 1274 PANTHER ABC TRANSPORTER B FAMILY 759 1266 IPR039421 -
Sebi236g00022 1274 ProSitePatterns ABC transporters family signature. 1167 1181 IPR017871 GO:0005524|GO:0016887
Sebi236g00022 1274 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1025 1265 IPR027417 -
Sebi236g00022 1274 CDD ABC_6TM_Pgp_ABCB1_D2_like 761 1010 - -
Sebi236g00022 1274 Gene3D ABC transporter type 1, transmembrane domain 175 408 IPR036640 GO:0005524|GO:0016020
Sebi236g00022 1274 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 178 406 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi236g00022 1274 Pfam ABC transporter 448 597 IPR003439 GO:0005524
Sebi236g00022 1274 Gene3D - 420 668 IPR027417 -
Sebi236g00022 1274 Gene3D - 1017 1268 IPR027417 -
Sebi236g00022 1274 SMART AAA_5 1055 1241 IPR003593 GO:0016887
Sebi236g00022 1274 SMART AAA_5 457 658 IPR003593 GO:0016887
Sebi236g00022 1274 MobiDBLite consensus disorder prediction 1 67 - -
Sebi236g00022 1274 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1028 1264 IPR003439 GO:0005524
Sebi236g00022 1274 Pfam ABC transporter transmembrane region 745 976 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi236g00022 1274 Pfam ABC transporter transmembrane region 178 406 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi236g00022 1274 MobiDBLite consensus disorder prediction 1 52 - -
Sebi236g00022 1274 Coils Coil 709 729 - -
Sebi236g00022 1274 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 421 666 IPR027417 -
Sebi236g00022 1274 Pfam ABC transporter 1047 1194 IPR003439 GO:0005524
Sebi236g00022 1274 FunFam ABC transporter B family member 1 420 668 - -
Sebi236g00022 1274 FunFam ABC transporter B family member 1 1018 1268 - -
Sebi236g00022 1274 FunFam ATP-binding cassette transporter, subfamily B, member 2, group MDR/PGP protein PpABCB2 879 1019 - -
Sebi236g00022 1274 CDD ABC_MTABC3_MDL1_MDL2 430 667 - -
Sebi236g00022 1274 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 430 666 IPR003439 GO:0005524
Sebi236g00022 1274 CDD ABC_6TM_Pgp_ABCB1_D1_like 177 407 - -
Sebi236g00022 1274 SUPERFAMILY ABC transporter transmembrane region 178 406 IPR036640 GO:0005524|GO:0016020
Sebi236g00022 1274 Gene3D ABC transporter type 1, transmembrane domain 409 993 IPR036640 GO:0005524|GO:0016020
Sebi236g00022 1274 ProSitePatterns ABC transporters family signature. 569 583 IPR017871 GO:0005524|GO:0016887
Sebi236g00022 1274 CDD ABC_MTABC3_MDL1_MDL2 1028 1266 - -
Sebi236g00022 1274 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 750 992 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi236g00022 1274 SUPERFAMILY ABC transporter transmembrane region 748 1008 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi236g00022 Sebi-Chr236 325893 332848 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi236g00022 772 1271 Calmodulin-binding Proteins AT2G36910 39.364 4.05e-104 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi236g00022 K05658 - gmx:100816700 1816.2