Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi236g00012 ATGGCTACAGCTACCAACGCCGCCGCAGCCCCGCCGCGCCAGCTCTCTCAGAAGGAAGCTGACATCCAGATGATGTTGGCTGCCGACGTCCATCTCGGCACCAAAAACTGTGACTTCCAAATGGAACGTTACATTTTCAAGCGCCGCAACGACGGGATTTACATTATAAATCTTGGGAAGACTTGGGAGAAGCTTCAACTTGCTGCTAGGGTTATTGTTGCCATTGAGAACCCTCAGGACATCATTGTTCAGTCTGCTAGGCCTTATGGACAAAGAGCCGTTCTCAAGTTTGCACAGTACACTGGTGCTCATGCTATTGCTGGAAGGCACACTCCTGGTACCTTCACCAATCAGCTCCAAACTTCATTCAGTGAGCCTCGCCTTCTCATCCTCACAGATCCAAGAACGGATCATCAGCCCATTAAGGAAGCTGCCCTTGGAAACATTCCAACGATTGCTTTTTGTGACACGGATTCTCCTATGCGGTATGTTGACATTGGAATTCCTGCCAATAACAAGGGCAAACATAGCATAGGTTGTCTGTTTTGGCTTCTTGCAAGGATGGTGTTGCAGATGCGTGGCACTATTCGCCCTGGCCTTAAGTGGGATGTCATGGTGGATTTGTTCTTCTATAGAGAACCAGAAGAGACCAAGCCACAAGAGGAGGAAGAAGCTACTGCTGTTGATTATGCCATTACAGACTTCAATGCAAGTGCTATTCCTGCTGATGGCCAGTGGCCTGCTGCCATTGATCAGTCATGGACTGATGCAGTTCCACAACCTATTGCAGCAGTTCCCGGTGTCAGCTGGGCAGCCCCAGAAGCTGGAGACTGGGGTGAGGCTGTTCCACCACCACAACAACAAATTCCTGCTCCACCCGGAGTTGAGTCTGTCCAACCATCTGGTTGGGATTAA 915 0.4995 MATATNAAAAPPRQLSQKEADIQMMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEETKPQEEEEATAVDYAITDFNASAIPADGQWPAAIDQSWTDAVPQPIAAVPGVSWAAPEAGDWGEAVPPPQQQIPAPPGVESVQPSGWD 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi236g00012 304 Gene3D - 21 227 - -
Sebi236g00012 304 Hamap 40S ribosomal protein SA [rps-0]. 9 273 IPR027498 GO:0003735|GO:0006412|GO:0015935
Sebi236g00012 304 PRINTS Ribosomal protein S2 signature 126 143 IPR001865 GO:0003735|GO:0005840|GO:0006412
Sebi236g00012 304 PRINTS Ribosomal protein S2 signature 52 61 IPR001865 GO:0003735|GO:0005840|GO:0006412
Sebi236g00012 304 PRINTS Ribosomal protein S2 signature 22 40 IPR001865 GO:0003735|GO:0005840|GO:0006412
Sebi236g00012 304 PRINTS Ribosomal protein S2 signature 164 178 IPR001865 GO:0003735|GO:0005840|GO:0006412
Sebi236g00012 304 PRINTS Ribosomal protein S2 signature 143 154 IPR001865 GO:0003735|GO:0005840|GO:0006412
Sebi236g00012 304 PRINTS Ribosomal protein S2 signature 101 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
Sebi236g00012 304 ProSitePatterns Ribosomal protein S2 signature 2. 126 150 IPR018130 GO:0003735|GO:0005840|GO:0006412
Sebi236g00012 304 Pfam Ribosomal protein S2 124 189 IPR001865 GO:0003735|GO:0005840|GO:0006412
Sebi236g00012 304 Pfam Ribosomal protein S2 25 119 IPR001865 GO:0003735|GO:0005840|GO:0006412
Sebi236g00012 304 SUPERFAMILY Ribosomal protein S2 17 207 IPR023591 -
Sebi236g00012 304 CDD RPS2 25 191 IPR001865 GO:0003735|GO:0005840|GO:0006412
Sebi236g00012 304 PANTHER 40S RIBOSOMAL PROTEIN SA 12 288 IPR005707 GO:0003735|GO:0006412|GO:0015935
Sebi236g00012 304 MobiDBLite consensus disorder prediction 269 304 - -
Sebi236g00012 304 FunFam 40S ribosomal protein SA 21 227 - -
Sebi236g00012 304 NCBIfam 30S ribosomal protein S2 17 213 IPR005707 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi236g00012 Sebi-Chr236 173449 175110 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi236g00012 4 269 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 76.208 3.93e-151 423