Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi235g00054 ATGGGTCGTGTAGATGGCATTGTTCCCACTTTACATTTCCCTGATTCATCACCTGTTGTGAATCAAAACATGTTTTCCAATTGGGAAGCAGTATCAGCTGAGAATCTAGAAGATGCCAACAAGATGTTGCTTGAAATTTCCCAACTTTCTACACCATTTGGTACATCAGCACAGCGTGTTGCAGCATATTTCTCAGAAGCCATATCAGCAAGACTAGTTAGTTCATGTTTGGGAATATATGCATCTCTTCCTCACACCCACCAAAGCCATAAGGTAGCATCAGCTTTCCAAGTCTTCAATGGAATCAGCCCTTTTGTAAAGTTCTCACATTTCACTGCAAACCAAGCTATACAAGAAGCTTTTGATAGAGAAGAGAGGGTGCATATCATAGATCTGGACATAATGCAGGGTTTGCAATGGCCTGGTTTATTTCATATCCTTGCTTCAAGACCTGGTGGACCCCCTTATGTGAGGCTCACAGGGTTAGGTACTTCCATGGAAGCACTTGAAGCAACTGGTAAACGTTTGTCTGATTTTGCTAGTAAACTTGGCCTTCCCTTTGAGTTCTTCCCAGTTGCTGATAAAGTTGGGAACCTTGACCCTGAGAGGCTTAATGTTAGCAAAACTGAAGCTGTTGCTGTTCATTGGTTGCAACATTCACTCTATGATGTCACTGGATCAGATACAAACACTTTGTGGCTCTTGCAAAGGTTGGCACCTAAAGTGGTGACTGTGGTAGAGCAGGACCTGAGCAACGCTGGTTCTTTCTTAGGAAGTGAAGAGAGACATGTGGTGGAGCAGCAGCTACTATCTAGGGAGATTCGTAATGTGCTAGCAGTTGGGGGCCCATCAAGAACTGGAGAGATCAAGTTCCATAACTGGAGAGAAAAGCTTCAACAGTGTGGGTTTAGAGGTATTTCACTAGCTGGTAATGCTGCCACACAAGCAAGTTTACTCCTTGGCATGTTCCCTTCTGAAGGGTATACCTTAGTGGAGGATAATGGGATCCTTAAACTTGGTTGGAAAGATCTTTGCTTGCTTACTGCTTCAGCTTGGAGACCTCCCTACCATAGTAGCACTGCCATTACTCATCATAACTAA 1101 0.4378 MGRVDGIVPTLHFPDSSPVVNQNMFSNWEAVSAENLEDANKMLLEISQLSTPFGTSAQRVAAYFSEAISARLVSSCLGIYASLPHTHQSHKVASAFQVFNGISPFVKFSHFTANQAIQEAFDREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFASKLGLPFEFFPVADKVGNLDPERLNVSKTEAVAVHWLQHSLYDVTGSDTNTLWLLQRLAPKVVTVVEQDLSNAGSFLGSEERHVVEQQLLSREIRNVLAVGGPSRTGEIKFHNWREKLQQCGFRGISLAGNAATQASLLLGMFPSEGYTLVEDNGILKLGWKDLCLLTASAWRPPYHSSTAITHHN 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi235g00054 366 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 29 348 IPR005202 -
Sebi235g00054 366 Pfam GRAS domain family 259 353 IPR005202 -
Sebi235g00054 366 Pfam GRAS domain family 23 256 IPR005202 -
Sebi235g00054 366 ProSiteProfiles GRAS family profile. 11 353 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi235g00054 Sebi-Chr235 1101954 1103937 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi235g00054 29 354 GRAS Transcription Factor Family AT3G54220 79.944 0.0 568
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Sebi235g00054 GRAS 1.9e-76 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi235g00054 - - gmx:100806779 638.262