Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi235g00051 ATGGGCAACTGCGGTACCAGAGAGGAATCCGCCGTAGTTTCCAATGCTCAAGTTCAGCAGCTTCATCACGCGTCGTCACTGGGCGCTGGTGGTTCCAGAAACCAAACCGGTGGTGGTGGCGCGATTGAGAAGAAGCACAGTTTGAGACACACTCTGAGAGGGTTCGGCACCGTTTATAAAGGCTACATTGACGAGAACGTGAGGGTTGGACTCAAGTCCCTCCCTGTCGCCGTCAAGACGGAGGTGAATTTTCTAGGGCAGCTTAGGCATCCGAATCTGGTGAAGTTGATCGGGTACTGCTGTGAGGATGACCATAGGTTGCTTGTGTATGAGTTCATGTTTCGAGGAAGTCTGGAAAATCACCTATTCCGAAAGGCAACTGTCCCTTTATCATGGGGTACAAGAATGATGATTGCTCTTGGAGCTGCCAAAGGACTTGCCTTTCTCCACAATGCTGAAAGGCCAGTAATCTATCGTGACTTCAAAACGTCTAATATATTATTGGACTCTGACTATACAGCCAAGCTTTCTGATTTCGGGCTAGCTAAAGCAGGACCCCAAGGTGACGAAACCCATGTATCCACCCGAGTCATGGGTACATATGGTTATGCTGCCCCTGAATATGTAATGACTGGCCACCTGACAGCTAGGAGTGATGTGTATAGCTTTGGAGTTGTTCTTTTGGAACTTCTAACGGGAAGGAAGTCTGTTGACAAGACAAGACCTGGAAAGGAACAGAGCTTGGTAGATTGGGCACGGCCAAAGCTCAATGACAAGAGGAAGCTCCTACAAATAATTGATCCTAGATTGGAGAATCAATACTCAGTGAGGGCAGCACAGAAAGCATGTAGCTTGGCTTACTACTGTTTGAGTCAAAATCCCAAAGCAAGGCCACTAATGAGTGATGTAGTTGAGACATTGGAACCCTTACAAAGTTCTAGTGTTGGTGCAGGTGAAATCTCATTATCAGGATCAAATAGTGGGAGCAGCGCGCCATTTGCTATGAGCAAAATCTCTGACTACCGGATGCGTCACAAGTTTTCAAACAACGTTGGTCCAGGTGCTACTTGTCGGTCTCCAAACCCAAATTGCTCACCGGGTGCTCCAGCAGCATGCCGAGTTAGATGA 1128 0.4778 MGNCGTREESAVVSNAQVQQLHHASSLGAGGSRNQTGGGGAIEKKHSLRHTLRGFGTVYKGYIDENVRVGLKSLPVAVKTEVNFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRKATVPLSWGTRMMIALGAAKGLAFLHNAERPVIYRDFKTSNILLDSDYTAKLSDFGLAKAGPQGDETHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRKSVDKTRPGKEQSLVDWARPKLNDKRKLLQIIDPRLENQYSVRAAQKACSLAYYCLSQNPKARPLMSDVVETLEPLQSSSVGAGEISLSGSNSGSSAPFAMSKISDYRMRHKFSNNVGPGATCRSPNPNCSPGAPAACRVR 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi235g00051 375 ProSiteProfiles Protein kinase domain profile. 44 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi235g00051 375 MobiDBLite consensus disorder prediction 24 43 - -
Sebi235g00051 375 MobiDBLite consensus disorder prediction 354 375 - -
Sebi235g00051 375 Pfam Protein kinase domain 55 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi235g00051 375 Gene3D Phosphorylase Kinase; domain 1 53 113 - -
Sebi235g00051 375 Gene3D Transferase(Phosphotransferase) domain 1 114 319 - -
Sebi235g00051 375 SUPERFAMILY Protein kinase-like (PK-like) 54 306 IPR011009 -
Sebi235g00051 375 FunFam Probable serine/threonine-protein kinase PBL8 113 324 - -
Sebi235g00051 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 156 168 IPR008271 GO:0004672|GO:0006468
Sebi235g00051 375 PANTHER OS01G0588500 PROTEIN-RELATED 53 311 - -
Sebi235g00051 375 CDD STKc_IRAK 54 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi235g00051 Sebi-Chr235 1031592 1035338 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi235g00051 54 307 Glycoside Hydrolase AT3G07070 53.962 1.15e-90 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Sebi235g00051 Pkinase 1.3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi235g00051 - - gmx:102662348 653.284