Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi235g00049 ATGGCTTGGAATCCCTTCAAGCTTATCTACCTCTTTCTCCTTGTTAGCTTCTTCAATTTCGCAACTACTAAAGCACAGGATCCTACTCTTATGTACCAAGATTGCTTGGGAAATGAAACCACTACTGGAAACAGCGCCCACCAACACCAAGTAGATCTCAAGACAACCCTCCTCTCTTCCTTATCTTCTAACGCCACCAACAAAAAATTCTATAACACCACAGTTATTGGCAGAAACCCCTCCGACACATTCTATGGACTGTTCATGTGCAGAGGTGATGTATCCTCTCAGCTCTGCCGACACTGTGTCGTAAACGCATCCCAGTCACTACTACATGAGTGCTCATCCGATCCAGCTCCAGCAGTAGTTTGGTACGCGGAATGCATGGTTCGTTATTCCAACGTCTCTTTCTTCTCCACTGTGGATACATCCCCTTTTTTATACCAGTATACCATAGCCAATGTCTCCAACCAGGCAAGTTTCAATCCTTTGATGTTCAAAACCATAAACCACACTGCAAATGAAGCTGCTGCCAATTCTCCTAATGGTGATCAGAAGTACGCCACAAAGCAAGCAAAATTATCTGAATCTCAGACGCTTTACACTCTAGCTCAGTGCACTCCAGACCTGTCATCACAAGATTGCAGAGTGTGCCTTGGACAAGCAATAGAGCTGCTTCCAGAATGCTGTGGAGGAAGTCAAGGAGTAACAATTATGTTCCCCAGCTGTAACATTAGGTATGAATTATACCCTTTCTATCTTGCCCCTAATATGGGGCCAGGAGGATTTGTTCCTGAAACAAACTATCCAAAAAAAGATTCAAATTATTCGGAAGATCCTGGATATCTTTCCCATAACTGTTTAAATAACCAAAACATCACCGCTGATAGTACTTTCAAAAGAAGCCTCAGCTTCGTCCTTTCTGATATGTCTTCCAATGCAACCGTCAACAGCAAAAAATTCTTCCAAACCGACGCCTCTGAAACAGTGTATGGCCTCTTCATGTGCCGTGGCGACATTTCTCCTCTGCTCTGTGGAAAGTGTGTCCAAAACGCTACTCGCCAAATAGCGTCTCGTTGTCGTTTATCAAGGGAGGCTATAATTTGGTACAATCATTGCTTCGTTCGCTATTCCAATCAGTCTTTCTCATCCATGGTGGACACAAGTCCCAGATCCGTGATGTTGAATATCACCAATATCTCCTACGTCAAGCAGGTGAACACTTATTTATTATCCAATGCGTTATCTGAAACGGCAAGGCAGACGGCGGTGAGTGGCGAGAGATATGGAACAAAATCGTTAAAGTTGAATTATGAGCAAACGCTCTACATTCTGAGTCAATGCACGCAAGATTTATCTAGCGATGATTGTCGTGGTTGCCTAGAGGATGTGATTGGATCGGCAATTCCATGGTCTCGTTTGGGAAGCATAGGGGGAAGAGTTTTATATCCTACCTGCAATCTCAGATTTGAATTGTTCCAATTTTACAATCTCAAGTTGACCGAGAGAGGCAGAGCTACTCCAAAATCTACAGTTGGACAAGATAGTACCAGTTTAGAGTCATTGCAATTTGATTTGGCTATAATTGAAGCGGCAACAAATAACTTTTCACACCAGAACAAGATTGGTAAAGGTGGATTTGGAGAAGTTTATGAGGGCATTCTTATTGATGGAAGACATATAGCGGTGAAGAGGCTCTCAAAAACTTCTAGGCAAGGTACAGAGGAGTTCAAAAATGAGATTCTATTGATAGCCAAACTTCAACACCGAAATCTAGTCGCATTCATAGGATTTTGTCTTGAAGAGCAAGAGAAAATACTCATCTATGAATATGTGCCGAACAAGAGCTTGGATTACTTTTTATTTGATACTCAACAACAAAAGCTGTTAAGTTGGTTTGAGCGTCATGAAATTATAGGAGGAATTGCTCGAGGGATTCTTTATTTACATGAATACTCTCGACTTAAAGTTATACACCGTGATCTTAAACCAAGTAACATACTATTAGATGAAAATATGAATCCAAAAATTTCAGATTTTGGTCTTGCTAGAATTGTCGCAATCGATCAAGATGAAGGAAGTACCAACAAAATTGTTGGAACATATGGTTATATGTCTCCAGAGTATGCAATGCTTGGACAATTTTCTGAGAAATCAGATGTTTTCAGTTTTGGAGTAATGGTTTTAGAGATTATCACTGGAAAAAAGAATGCAAGATCTTATGAATCATTCCGTGATGCTGATGGTCTCCTAAACTATGTGAGTGCAATAACCTTATAA 2280 0.4088 MAWNPFKLIYLFLLVSFFNFATTKAQDPTLMYQDCLGNETTTGNSAHQHQVDLKTTLLSSLSSNATNKKFYNTTVIGRNPSDTFYGLFMCRGDVSSQLCRHCVVNASQSLLHECSSDPAPAVVWYAECMVRYSNVSFFSTVDTSPFLYQYTIANVSNQASFNPLMFKTINHTANEAAANSPNGDQKYATKQAKLSESQTLYTLAQCTPDLSSQDCRVCLGQAIELLPECCGGSQGVTIMFPSCNIRYELYPFYLAPNMGPGGFVPETNYPKKDSNYSEDPGYLSHNCLNNQNITADSTFKRSLSFVLSDMSSNATVNSKKFFQTDASETVYGLFMCRGDISPLLCGKCVQNATRQIASRCRLSREAIIWYNHCFVRYSNQSFSSMVDTSPRSVMLNITNISYVKQVNTYLLSNALSETARQTAVSGERYGTKSLKLNYEQTLYILSQCTQDLSSDDCRGCLEDVIGSAIPWSRLGSIGGRVLYPTCNLRFELFQFYNLKLTERGRATPKSTVGQDSTSLESLQFDLAIIEAATNNFSHQNKIGKGGFGEVYEGILIDGRHIAVKRLSKTSRQGTEEFKNEILLIAKLQHRNLVAFIGFCLEEQEKILIYEYVPNKSLDYFLFDTQQQKLLSWFERHEIIGGIARGILYLHEYSRLKVIHRDLKPSNILLDENMNPKISDFGLARIVAIDQDEGSTNKIVGTYGYMSPEYAMLGQFSEKSDVFSFGVMVLEIITGKKNARSYESFRDADGLLNYVSAITL 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi235g00049 759 ProSiteProfiles Gnk2-homologous domain profile. 143 252 IPR002902 -
Sebi235g00049 759 ProSiteProfiles Gnk2-homologous domain profile. 281 382 IPR002902 -
Sebi235g00049 759 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 499 611 - -
Sebi235g00049 759 ProSitePatterns Serine/Threonine protein kinases active-site signature. 657 669 IPR008271 GO:0004672|GO:0006468
Sebi235g00049 759 Gene3D Phosphorylase Kinase; domain 1 499 611 - -
Sebi235g00049 759 Gene3D Transferase(Phosphotransferase) domain 1 612 758 - -
Sebi235g00049 759 Pfam Salt stress response/antifungal 401 491 IPR002902 -
Sebi235g00049 759 Pfam Salt stress response/antifungal 287 380 IPR002902 -
Sebi235g00049 759 Pfam Salt stress response/antifungal 156 250 IPR002902 -
Sebi235g00049 759 Pfam Salt stress response/antifungal 42 134 IPR002902 -
Sebi235g00049 759 ProSitePatterns Protein kinases ATP-binding region signature. 542 564 IPR017441 GO:0005524
Sebi235g00049 759 ProSiteProfiles Gnk2-homologous domain profile. 388 495 IPR002902 -
Sebi235g00049 759 FunFam Lectin-domain containing receptor kinase A4.3 612 757 - -
Sebi235g00049 759 FunFam Cysteine-rich receptor-like protein kinase 25 390 495 - -
Sebi235g00049 759 FunFam Cysteine-rich receptor-like protein kinase 25 145 252 - -
Sebi235g00049 759 SUPERFAMILY Protein kinase-like (PK-like) 515 741 IPR011009 -
Sebi235g00049 759 SMART serkin_6 536 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi235g00049 759 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 196 741 - -
Sebi235g00049 759 Pfam Protein kinase domain 537 737 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi235g00049 759 ProSiteProfiles Protein kinase domain profile. 536 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi235g00049 759 ProSiteProfiles Gnk2-homologous domain profile. 29 137 IPR002902 -
Sebi235g00049 759 Gene3D - 27 137 IPR038408 -
Sebi235g00049 759 Gene3D - 280 382 IPR038408 -
Sebi235g00049 759 Gene3D - 146 252 IPR038408 -
Sebi235g00049 759 Gene3D - 391 495 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi235g00049 Sebi-Chr235 956357 959805 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi235g00049 277 757 Receptor kinase-like Gene Family AT4G05200 43.693 7.54e-140 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Sebi235g00049 Pkinase 7.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi235g00049 - - pvu:PHAVU_008G077500g 893.264