Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi235g00046 ATGGCATTGGTCTCTGGTGCTTTCCATATGATTTCCAGTTTGTGTGGTCGTCGTCAAAGTTGGCGCTTGAGGGTGAAGTTGGTCAGGGCTTGGAACATGTGTTCTCTGGCAAAGCCTGATGACCCATTTGCGTTGGAGATGGTTTTTATCGATGAAGAGGCCACTGTTGCGAAGCAACACATGATGAGGTTTGCCCAAGCTGTCGTTGAGGGTCAAGTGTACAGGCTAACTAACTTTGGATTGACGGCTAATTCTGGGAAGTTTCGAGCAGCTGCTCACGAATTTAAGCTGGTGTTTAACGTCGGAACGAGACTGATTCCTTGCCACTCTGTCCCTATACCTCTGTCTGGTTTGTCGCTGGTGAAGTCTTCAGAAACTAAGGAAACAAATGGCTGCTCTAATTTCCTTCTAGATTTCATGGGTGTCCTCACTGCGGTGTCGGAGGAAATAAACATGAAGAAGCAGGGCCGGGAGACACGACTCATGCTACTTGATTTAGTGGATGAAGGGGCAATAAGGTGTGCTATTTTTGGAGATATGGTTGATGTGGTTGCAGGATTTATTAACGTTCCTAGGAGTGGCCTTCCTGTGGTTATCATCCAGTTTGCAAAGATCAACACCTATAAGGGTGTTGTTGGGATCCAAAATGTCATGAATGCATCTAAGATTTCTTGGAATCCTGACTTACCAGAGGCCATTGAGTTTAAAAATGGCCTAGCTGTGCATGAGATAGAGACAAATGTCTCGATTGGTTTCATTAGCGACCGTAGCCGTCATGTGTCCATCAAAGAGGAGTTTTTATCAATTTTTCCCAAAAAAACCATTGGACAGCTCCATCTAACCCATGAGGATGGATGTTTCATTGTGATGGGAATCATTGAAGAAGTTATTCTCGAAGAGAATTGGTGGTATTTTGCCTGTTTATGCATGAAAGCCCTGTCATTTGATCTTGGTGTGCCATATTGTCGTGATTGCAAGAAAGTCGTGTTTGAGATGAATCCAAGGTTCAAGCTTAAAATTGTGGTGTCAGATGGGGTTGATTGTGTTCAACTAATCATGTTTGATGCTGAATGTTATTCTTTGCTGAACAAATATTGCCGTGAATTGTTAACTGAGATTAAGGGACACCCATCTGAGACTTACCCACCTGAAATCATGGAATTGATTGGGATGGAGTTCCTCTTCAAAGTTGAGAGCAATGAGGAATCATTGTTTCAATTTGATGATTCCTACAGGGTGAAGAGGGTGTGTTTTGACAAAAGCATTATTGAAGAGTACAAAGGTGGAATTGATGAAGAGACTCCACTAAAGCTGAAGTTCACTCCTCACTTCCCCAAGTTGGCCGATGTAGAAACAAATGCATGTGTCATGGAAATTTCACCCCAGGGAAATTCTATTATCACTGACACTGAAGCCAATGGAATTTCATGCCCTCCCTCAACATCTGGTTGCGAGGATAGTGTAGGACCGCAGAAAAGGTTGGCTGACCCACCATGTGATGTCGTTCCAGAGAAAAAAAAAGAAACAAGGCAAGCATTTTGA 1542 0.4326 MALVSGAFHMISSLCGRRQSWRLRVKLVRAWNMCSLAKPDDPFALEMVFIDEEATVAKQHMMRFAQAVVEGQVYRLTNFGLTANSGKFRAAAHEFKLVFNVGTRLIPCHSVPIPLSGLSLVKSSETKETNGCSNFLLDFMGVLTAVSEEINMKKQGRETRLMLLDLVDEGAIRCAIFGDMVDVVAGFINVPRSGLPVVIIQFAKINTYKGVVGIQNVMNASKISWNPDLPEAIEFKNGLAVHEIETNVSIGFISDRSRHVSIKEEFLSIFPKKTIGQLHLTHEDGCFIVMGIIEEVILEENWWYFACLCMKALSFDLGVPYCRDCKKVVFEMNPRFKLKIVVSDGVDCVQLIMFDAECYSLLNKYCRELLTEIKGHPSETYPPEIMELIGMEFLFKVESNEESLFQFDDSYRVKRVCFDKSIIEEYKGGIDEETPLKLKFTPHFPKLADVETNACVMEISPQGNSIITDTEANGISCPPSTSGCEDSVGPQKRLADPPCDVVPEKKKETRQAF 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi235g00046 513 Gene3D - 8 110 IPR012340 -
Sebi235g00046 513 MobiDBLite consensus disorder prediction 498 513 - -
Sebi235g00046 513 SUPERFAMILY Nucleic acid-binding proteins 130 240 IPR012340 -
Sebi235g00046 513 CDD RPA1_DBD_A_like 22 104 - -
Sebi235g00046 513 Gene3D - 267 425 IPR012340 -
Sebi235g00046 513 Pfam Replication factor-A C terminal domain 289 414 IPR013955 -
Sebi235g00046 513 SUPERFAMILY Nucleic acid-binding proteins 273 418 IPR012340 -
Sebi235g00046 513 MobiDBLite consensus disorder prediction 472 513 - -
Sebi235g00046 513 Gene3D - 112 247 IPR012340 -
Sebi235g00046 513 CDD RPA1_DBD_B_like 138 236 - -
Sebi235g00046 513 MobiDBLite consensus disorder prediction 472 487 - -
Sebi235g00046 513 CDD RPA1_DBD_C 272 416 IPR047192 -
Sebi235g00046 513 Pfam Domain of unknown function DUF223 53 113 IPR003871 -
Sebi235g00046 513 SUPERFAMILY Nucleic acid-binding proteins 8 112 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi235g00046 Sebi-Chr235 872514 875078 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi235g00046 9 402 Core DNA Replication Machinery Family AT5G08020 20.764 4.20e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi235g00046 - - lja:Lj6g3v0884310.1 358.221