Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi235g00043 ATGGAGGACGTCATGAACTATGCTAAGGATGGGAGTGTTAAAGTACCTGTTGGGTACAGGTTTGATCCCACAGATGAGATTCTTGTTAATTTCTACCTCAAGAGGAAGGTCTATGCTCTGTCTCTTCCTGCTCAAGTCATCCAAGAATTTGATGTTTTCCAAACAGAGCCATGGAAACTCGCCGGAGCTTCCACCTTTTCTGATAGATCTCCAAGCTACCTTCATTCAACATTTAGCAAAACAGCTCCTGATTTAAGACCAGTAAAAGATGGCTGCAACTTTGGTTGGAGGAAGCTGAATGCCACACTCTTGAGAGAGTTGGAAACAACACTGCTTACTCTTCAGGCTGTGTTGGATGATGCAGAGGAGAAGAAGATCATCAACCCTGCTGTCAAACAATGGCTAGATGAGCTCAAAGATGCAATTTTTGATGCTGAGGATTTGCTGAACCAAATTAGTTATGATTCCCTGCGATGCAAGGTGGAGAACACAGAAGCTGAAAACATCACTAATCAGGTGTGGAACTTCCTCTCATCTCCTTTTAACACCTTCTATAGAGAGATCAATTCCCAAATGAAGGATATGTGTCAAAGGCTGCAACTTTTTGCACAACATAAAGACATCCTCGGTTTGCAAACTGTAAGTGGGAGAGTTTCTAGGAGAATGCCAACAAGTTCAATAGTAAATCAATCTTCTATGGTTGGTAGGAAGGATGATAAAGAGAAACTAGTTAATATGTTGCTATCAAGCACTGGCACCAGCAGTAATAATATAGGTGTTGTCACAATTTTAGGCATGGGTGGTGTTGGAAAAACCACACTTGCTCAACTTCTTTACAATGATGAAGAAGTTGCAAAACATTTTGATCTGAAAGCCTGGGCATGTGTGTCAGAGGATTTTGATATTTTCAGACTAACTAAAACTCTTCTTGAATCTGTCACTTCAAGAGCTTGTGAAAGAAATGATCTTGATTTTCTTCGAGTTGAGTTAAGGAAAAACTTGAGTGATAAAAGATTTTTGTTTGTATTGGATGATCTATGGAATGACAAATATAATGATTGGGATGAACTAGTAACTCCCTTGATTAATGGAAAAACTGGAAGCAGGGTGATCATAACAACACGTCAACAAAAAGTTGCAGAGGTCACCCATACATTTCCTATTCATAAATTAGAACCCCTGTCAGATGAAGACTGCTGGTCTTTACTCTCCAAGCATGCATTTGGAAGTGAAGACTTTCATGGGAATGAATACAAAAGCCTAGAAGCAATTGGCAAGAAGATTGCAAAAAGGTGTGGGGGATTGCCAATAGCAGCCAAGACGCTTGGAGGACTTCTCCGTTCAAAAGTAGATGCAAAGGAGTGGACTGCAATTTTGAACAGCAATATATGGGAGTTACCAAATGATGATATTCTTCCTGCTTTGCTTTTGAGTTATCAATATCTCCCCTCTCATTTGAAAAGATGTTTTGCCTACTGCTCAATTTTTCCCAAGGATTATCCACTTGATAGGAAACAAGTGGTTTTGTTGTGGATGGCAGAGGGTTTCCTTGAACATTCTCAATGCAAAAAAGCAATGGAGGAGGTAGGTGATGACTTCTTTGATGAATTGTTATCCAGATCCTTGATTCAACACTCAAATGATGGTGCTAATGAAGAAAAGTTTGTTATGCATGACCTTGTGAATGATTTAGCTACATTTGTATCTGGAAAAAGTTGTTGTAGGCTTGAATGTGATAAAATCTCTGAAAGTGTTCGCCATTTGTCATATAACCAAGAAAGATATGACATTTCCAAGAAGTTTGAGATTTTCTACAAATTCAAATGCTTACGAACCTTCCTACCCATTTTCACACCTTGGAGGAGAGCAAATTTGTCTAGAAAAGTGGTAGATGATTTGATACCGTCACTCAAAATGTTGCGAGTATTATCATTATCATGGTATACAAACATCACATTGCTACCCGATTCATTTGGCAATTTGGTGCAGTTGCGGTATCTAGACCTCTCCCACACTGAACTCAAAAGCTTGCCTGATACAATATGTAATCTTTTCAATCTGCAGACCTTGATTTTATTATATTGCGAGAGTCTCACTGAATTGCCAGCACATGTTGAAAAGTTAGTTAATTTACGTCACCTTGATATTAGTTACACAAGCATAAGGGAGATGCCACTGCAAATTGTTGAATTAGAAAACCTACAAACTTTAACTGTTTTTGTAGTGGGCAAGCAACAAGGTTTAAGTATCAAAGAGCTTAGGAAGTTTCCTCACCTGCAGGGAAAACTTTCCATCTGGAACCTGCACAATGTCATTGATGCCATGGAGGCATATGATGTCAACTTGAAGAGTAAAGATAAAATTGAGGAGTTAAACCTATATTGGGGAAAATTTACTGAAGACTCACAAAAAGAAAAGGGTGTGCTTGATAGGTTGCAACCGACAATAAACCTGAAGAGACTTGCCATAGGCTCCTATGGCGGGACAAGCTTTCCTAGTTGGTTGGGGGATTCTTCATTTTCTAACATGGTGTCCCTTCACATAAGTGGTTGTGAATATTGTGTAACACTTCCACCATTAGGGCGTCTACCTGCTCTCAAGGACTTAAGAATTCGTAGCTTGACATTAGAAACAATTGGCCCAGAGTTCTACGGGGAAGGTTCCGTTTCTTCATTCCAACCATTTCCATCCCTGGAGTTTCTGGGGTTTTGGTGCATGACAAATTGGAAGGAATGGCTACCCTTTGAAAATGGCAAATTTCCTTTCCCTCGTCTTAAAAAACTGGAGATGCAGAGGTGTCCTGAGTTGAGGGGACATTTGCCAAGCCATCTTTTTTCCATTGAAGAAATTTTAATTTATCATTGTGATCATCTCTTGGCAACACCTCCTACTTTGCATTGGCTGTCGACAATAAAAAAAATTAATATTGGTCAAGATTTTCCTTCTCAAGGGTCTACTGAAAAGTTCCAATGCTCGTTGCTTGAGTGTGATTCTCCATGTCTGCTGCAGCATATCGACATGAGGTTCCGTGATAAGCTACTATCTCTACCAAAAATGATTCTGAGCAGCACTTGTCTTCGGTATTTGAGACTCGACTATATTCCATCTCTCACTGCATTTCCAGCAAATGGTCTACCTACTTCGTTACAGTCACTTATTATTCATGGATGTGAGAAATTAGCATTCCTGCCTCCTGAAACATGGACCAATTACACTTCCCTTGAGACTTTGGACATTATAGATAGCTGCAACTCACTTACATCCTTCCCATTGGATGGTTTCCCTGTGCTCCAACATCTTCACATTTGCCGTTGTAGTTGTCTAGAATCCATTTTCATTTCAGAGAGTTCTTCCCTTTTGCCGTTAAGCCTCCAATCACTTCATGTCTATGAATGTAAAGCACTTAGATCACTGCCTCAACGGATAGACACCCTTGCTGCTCTTGACTACTTGTCTCTCACAAAACTTGAAAAACTAGAATGGTCGTTTTCTGAAGGAGCTTTCCTGCCTCCTAAATTACGATCATTTAAAATTAACTCCCTAAGACTACCACCTCCAACGCCCATAACTGAGTGGGGTCTCCAAAGCCTGACTGCTCTTTCATATTTGACTATTGGAAGTGATGAGATTGTTAACAGCTTGCTGAAGGGGAATTTGTTGCCTATTTCTCTCGTGTCTCTGCGTATCAGTGATCTCTCTGAAATGAAATCATTAGATGGAAATGGGCTTCAACACCTCTCCTCTCTAGAAAGACTTGAGTTTTATGACTGCCCAAGACTTGAGTCCTTGCCAGATGACAAGTTGCCTTCCTCTCTTAAGATACTGGACATCAACGAATGCCCTTTGTTAGAAGTAAAGTATAAAAGTCAGAGCGGGGAACGTTGGTCCAACATTGCTCACATCCCTGTCATAATTATAAATTATGAAATCACAATATGA 3939 0.3996 MEDVMNYAKDGSVKVPVGYRFDPTDEILVNFYLKRKVYALSLPAQVIQEFDVFQTEPWKLAGASTFSDRSPSYLHSTFSKTAPDLRPVKDGCNFGWRKLNATLLRELETTLLTLQAVLDDAEEKKIINPAVKQWLDELKDAIFDAEDLLNQISYDSLRCKVENTEAENITNQVWNFLSSPFNTFYREINSQMKDMCQRLQLFAQHKDILGLQTVSGRVSRRMPTSSIVNQSSMVGRKDDKEKLVNMLLSSTGTSSNNIGVVTILGMGGVGKTTLAQLLYNDEEVAKHFDLKAWACVSEDFDIFRLTKTLLESVTSRACERNDLDFLRVELRKNLSDKRFLFVLDDLWNDKYNDWDELVTPLINGKTGSRVIITTRQQKVAEVTHTFPIHKLEPLSDEDCWSLLSKHAFGSEDFHGNEYKSLEAIGKKIAKRCGGLPIAAKTLGGLLRSKVDAKEWTAILNSNIWELPNDDILPALLLSYQYLPSHLKRCFAYCSIFPKDYPLDRKQVVLLWMAEGFLEHSQCKKAMEEVGDDFFDELLSRSLIQHSNDGANEEKFVMHDLVNDLATFVSGKSCCRLECDKISESVRHLSYNQERYDISKKFEIFYKFKCLRTFLPIFTPWRRANLSRKVVDDLIPSLKMLRVLSLSWYTNITLLPDSFGNLVQLRYLDLSHTELKSLPDTICNLFNLQTLILLYCESLTELPAHVEKLVNLRHLDISYTSIREMPLQIVELENLQTLTVFVVGKQQGLSIKELRKFPHLQGKLSIWNLHNVIDAMEAYDVNLKSKDKIEELNLYWGKFTEDSQKEKGVLDRLQPTINLKRLAIGSYGGTSFPSWLGDSSFSNMVSLHISGCEYCVTLPPLGRLPALKDLRIRSLTLETIGPEFYGEGSVSSFQPFPSLEFLGFWCMTNWKEWLPFENGKFPFPRLKKLEMQRCPELRGHLPSHLFSIEEILIYHCDHLLATPPTLHWLSTIKKINIGQDFPSQGSTEKFQCSLLECDSPCLLQHIDMRFRDKLLSLPKMILSSTCLRYLRLDYIPSLTAFPANGLPTSLQSLIIHGCEKLAFLPPETWTNYTSLETLDIIDSCNSLTSFPLDGFPVLQHLHICRCSCLESIFISESSSLLPLSLQSLHVYECKALRSLPQRIDTLAALDYLSLTKLEKLEWSFSEGAFLPPKLRSFKINSLRLPPPTPITEWGLQSLTALSYLTIGSDEIVNSLLKGNLLPISLVSLRISDLSEMKSLDGNGLQHLSSLERLEFYDCPRLESLPDDKLPSSLKILDINECPLLEVKYKSQSGERWSNIAHIPVIIINYEITI 1312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi235g00043 1312 Gene3D - 478 566 IPR036388 -
Sebi235g00043 1312 SUPERFAMILY L domain-like 556 978 - -
Sebi235g00043 1312 Gene3D NAC domain 24 100 IPR036093 GO:0003677|GO:0006355
Sebi235g00043 1312 PRINTS Disease resistance protein signature 333 347 - -
Sebi235g00043 1312 PRINTS Disease resistance protein signature 659 675 - -
Sebi235g00043 1312 PRINTS Disease resistance protein signature 260 275 - -
Sebi235g00043 1312 PRINTS Disease resistance protein signature 432 446 - -
Sebi235g00043 1312 Pfam NB-ARC domain 237 460 IPR002182 GO:0043531
Sebi235g00043 1312 SMART LRR_typ_2 708 731 IPR003591 -
Sebi235g00043 1312 SMART LRR_typ_2 661 684 IPR003591 -
Sebi235g00043 1312 Coils Coil 104 124 - -
Sebi235g00043 1312 PANTHER DISEASE RESISTANCE PROTEIN RP 104 933 IPR044974 GO:0006952
Sebi235g00043 1312 Pfam No apical meristem (NAM) protein 16 76 IPR003441 GO:0003677|GO:0006355
Sebi235g00043 1312 SUPERFAMILY NAC domain 11 92 IPR036093 GO:0003677|GO:0006355
Sebi235g00043 1312 Gene3D - 101 201 - -
Sebi235g00043 1312 Gene3D - 393 477 IPR042197 -
Sebi235g00043 1312 FunFam Probable disease resistance protein At1g61300 217 385 - -
Sebi235g00043 1312 Gene3D - 215 386 IPR027417 -
Sebi235g00043 1312 FunFam Probable disease resistance protein At1g63360 479 567 - -
Sebi235g00043 1312 Pfam Rx N-terminal domain 104 163 IPR041118 -
Sebi235g00043 1312 Gene3D Ribonuclease Inhibitor 602 992 IPR032675 -
Sebi235g00043 1312 Gene3D Ribonuclease Inhibitor 993 1302 IPR032675 -
Sebi235g00043 1312 ProSiteProfiles NAC domain profile. 15 164 IPR003441 GO:0003677|GO:0006355
Sebi235g00043 1312 SUPERFAMILY L domain-like 997 1284 - -
Sebi235g00043 1312 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 217 493 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi235g00043 Sebi-Chr235 847926 852620 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi235g00043 3 82 NAC Transcription Factor Family AT5G13180 43.529 3.13e-12 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi235g00043 NB-ARC 8.9e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi235g00043 - - tpra:123915821 1474.53