Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi235g00038 ATGAAATTAAATTATGCATACCGTGCAATGCACCGAAAGAAACATAGTCTGAATGAGCCAAAAATTTACAATCAGTGCCAAAACGTCGTCGTGTGGTGTGTTGACGAGACGGAGTCGCCGGCTGAGGATTTGATAGAAAGGATCCCACTTTCAGCTTGTTCACGCACTTACTCAGATTTTGGGAATCATATGGTTACCCCAAGCTCTCAAAGGAGGCTTAGAGGAAGATTCAGGCACAACAGTTCTGAATCAGTTGAGAGCATTTTATCACAACAGCTCCCTCATATGGTTAATACTGTGAGACAAAACCAATCCATTGCATCTGCGGAGGATGATCAACTCTTAGATGATGACACCCCTACTAGGTCGTTGCAGTATGCTAGTACACATACTACCCCTAGTGGGTCTAGGCGATGGAGGCAGGTTCTCTCTGATACTGACAGTGATGGTTTTGATAATTGGAGTTCTCTTTATGGTGAAAATGAATCAAGTGCAAGTTTTAGAAGGTATAGGGTTCCCCATGGTGAGACTGATTCTTTTTCTTTTAGTGCTTATGGAGTAGCTGACGCCGATGAAGCTGAAGCCACAGCTCGCCTTCGAATTCTTTTAACCTCAAGTCCAAGTGAGAGCAGGGGTGGCGTTAATTGGGAGCAAAGGTTTAATTCTACTGAACCTGAAGGAATATTTAGCCAGATAATCAGGGATACCTGGCAAGCTTTGGAGGATGCTGATTTACATCATGGAGCAAACTTTGGGGATTATCTTGATATTAGACCCTTTGAAGATCTGCTTGAGCATCTTGCTGAAAATGACATCTCAAGACGAGGAGCGCCTCCTGCTGCTGTGTCTTTTGTGAATAACCTGCCCCGAGTAGTCATTGGCAAGGAACATGAGAAGCATGGCGAACTAGTCTGTGCCATTTGCAAGGATGTCTTGTCCCCTGGCACTGAAGTAAATCAGCTTCCCTGTTCTCACCTTTATCACAACCGTTGCATTTTGCCATGGTTGAGTACACGAAACTCATGCCCTCTTTGTCGTTATGAGCTTCCAACTGATGATAAGGATTATGAAGAGGGAAAGCAGAACATTGATGATGATAATTCCTCTGATGTTTCTGATGAAGCTGAAGTGGTGAAGAGGATGGTACTACTCAAGGTGGAAGACAACAGAGAGGAGTTGTTAGCAATGGTTCTACCACTAATTCTTCCGCAACAAGAGGTGGTAGAGGAAGATGCAACTCTCAGATTGAAGGGAGTAGACATCTGGGTGGTCGCTACTTATCCGGGCAAAATCAACATGTGGTTCATGCTTATGCCTCCCAAAACCAAAGGGAGAGTAGAAGCAGAAGATGGTGGTGTCCATTCTAAGTGCTTTGCCAGTTGTTCATCAATAATGCTTTGTGATAGCCACTTGAGATGA 1419 0.4419 MKLNYAYRAMHRKKHSLNEPKIYNQCQNVVVWCVDETESPAEDLIERIPLSACSRTYSDFGNHMVTPSSQRRLRGRFRHNSSESVESILSQQLPHMVNTVRQNQSIASAEDDQLLDDDTPTRSLQYASTHTTPSGSRRWRQVLSDTDSDGFDNWSSLYGENESSASFRRYRVPHGETDSFSFSAYGVADADEAEATARLRILLTSSPSESRGGVNWEQRFNSTEPEGIFSQIIRDTWQALEDADLHHGANFGDYLDIRPFEDLLEHLAENDISRRGAPPAAVSFVNNLPRVVIGKEHEKHGELVCAICKDVLSPGTEVNQLPCSHLYHNRCILPWLSTRNSCPLCRYELPTDDKDYEEGKQNIDDDNSSDVSDEAEVVKRMVLLKVEDNREELLAMVLPLILPQQEVVEEDATLRLKGVDIWVVATYPGKINMWFMLMPPKTKGRVEAEDGGVHSKCFASCSSIMLCDSHLR 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi235g00038 472 Pfam Ring finger domain 305 346 IPR001841 -
Sebi235g00038 472 FunFam E3 ubiquitin-protein ligase RING1-like 266 352 - -
Sebi235g00038 472 MobiDBLite consensus disorder prediction 107 138 - -
Sebi235g00038 472 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 136 350 - -
Sebi235g00038 472 SMART ring_2 305 345 IPR001841 -
Sebi235g00038 472 MobiDBLite consensus disorder prediction 119 138 - -
Sebi235g00038 472 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 266 352 IPR013083 -
Sebi235g00038 472 SUPERFAMILY RING/U-box 288 352 - -
Sebi235g00038 472 CDD RING-H2_PA-TM-RING 304 346 - -
Sebi235g00038 472 ProSiteProfiles Zinc finger RING-type profile. 305 346 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi235g00038 Sebi-Chr235 775467 779147 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi235g00038 79 363 C3H Transcription Factor Family AT5G01980 46.377 1.42e-77 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi235g00038 - - psat:127127254 340.117