Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi235g00029 ATGCCGGCTCTGAGAATTCATGGATATGCCTTGGCTGTTTCGTTTTGTTTTATCATCGTCATAGCAGCCTCACAACGAACAGATCCTTCTGAAGTGAAAGCGCTGATGGACATTAGAAAGAGTTTGATTGATCCCATGGACCACCTGAAGAACTGGAAAAAGGGTGATCCATGTGCAGCAAATTGGACCGGGGTTTTGTGTTTTGATAGGAAGGAGGCTGATGGTTACTTCCATATCCGTGAGCTCTACCTAATGACTCGGAATCTCTCGGGAAGTCTAGCACCTCAGCTTGGTCAGCTCTCATATCTTGAGATACTGAATTTCATGTGGAACAATCTGACAGGCACAATACCGAAGGAGATTGGAAATATTACATCATTGAAACTCTTGCTTCTGAGTGGGAATAAATTATCTGGTAGTTTACCAGATGAGCTTGGCAACCTTTCAAAATTGAATAGATTCCAAGTTGATGAAAACCAATTATCAGGTCTTGTACCAGAATCATTTGCCAACTTGATCAATGTTAAACACCTCCACATGAACAACAACTCATTCAGTGGTCAAATTCCATCCCAACTATCAAACCTATCCATTCTTCTGCATTTGCTTCTGGATAACAATAACTTATCTGGCTCTCTTCCACCAGAATTCTCCATGTTACAAAGTTTGGCAATACTCCAACTTGATAACAATAATTTCAGCGGGAATGGAATTCCTTCTACCTATGCAAACTTATCCAACTTAGTAAAACTGAGTCTAAGAAACTGCAGTCTGCAAGGAGCTGTTCCTGATTTCAGTCCAATACCCAAACTAAGCTATTTAGATCTTAGCTGGAATCAGTTTACTGGACCCATACCATCAAAGAAACTTGCAGACAATATGACAACCGTTGATCTGTCCAATAATCATCTCAATGGATCTATTCCTCGAAGCTTTTATCCTCATCTCCAAAAATTGGCACTTGAGAACAATTTACTGTCTGGCTCCGTCCCTGCTAGCATATGGCAGAACTTGTCCTTCAGTAGGAGTGCTAAACTTACAATTGGGCCAAGGGGTTATGGGAATGTCTATAAAGGCATTTTATGTGATGAAACATTTGTTGCCATTAAGCGAGCAGAAGAAAATTCATTACAGGGCCAAAAAGAGTTTTTGACTGAGATTGAGCTTTTATCAAGGTTACACCATCGAAATCTTGTCTCACTGATTGGCTACTGTAATGAAGAAGGGGAGCAGATGCTGGTTTATGAGTTCATGCCCAATGGCACCCTAAGGGATTGGATTTCTGGGTCAGGGTTACCTGGACCCAGAAATATGATGACTCATAAGTTGACTGATAAAAGTGATGTATATAGCTTAGGAAGTGTTTCTGGAGCTTTTAACAGCATGCAACCAATATCACGTGGAAAAAACATTGTCCGCGAGGCACTAGTAATAGTGCATGTTTTTGGCTCCATCCATTACACACTGACACACATGGGTTATGGTTATGCAACTCTGCGCTGTTGCATGATGCAAGTGAGATTCCAGTGCAGCAGTAGCACTGGAGCAATCGCACGTTACGCGCGTAGCGGTCAAATCCATAATGTTCGAAAGGTGTTCGACGAAACGCCTCACTCTCACAGAACCATTGCTTCATGGAACGCCATTGTTGCCGCGCACTTCGAAGCCCACCAGCCTCGCGAAGCCATTCTTCTGTTCGAGAAAATGCCCGAAAGAAACACCGTTTCCTGGAACGGAATGATTTCCGGGTACGTCAAAAACGGAATGATCACCGAAGCAAGGAAGATATTTGACACCATGCCTGACCGCAACGTTGTTTTCGTGGACTTCGATGGTTCGAGGTTACGTGCAAGAGGGCATGGTCGAAGAAGCAGAACGGCTCTTCTGGGAAATGCCCCACAAGAATGTGGTGTCGTGGACAGTTATGCTTGGTGGGTTGTTGAAAGAGTCTCGTGTTGA 1959 0.4329 MPALRIHGYALAVSFCFIIVIAASQRTDPSEVKALMDIRKSLIDPMDHLKNWKKGDPCAANWTGVLCFDRKEADGYFHIRELYLMTRNLSGSLAPQLGQLSYLEILNFMWNNLTGTIPKEIGNITSLKLLLLSGNKLSGSLPDELGNLSKLNRFQVDENQLSGLVPESFANLINVKHLHMNNNSFSGQIPSQLSNLSILLHLLLDNNNLSGSLPPEFSMLQSLAILQLDNNNFSGNGIPSTYANLSNLVKLSLRNCSLQGAVPDFSPIPKLSYLDLSWNQFTGPIPSKKLADNMTTVDLSNNHLNGSIPRSFYPHLQKLALENNLLSGSVPASIWQNLSFSRSAKLTIGPRGYGNVYKGILCDETFVAIKRAEENSLQGQKEFLTEIELLSRLHHRNLVSLIGYCNEEGEQMLVYEFMPNGTLRDWISGSGLPGPRNMMTHKLTDKSDVYSLGSVSGAFNSMQPISRGKNIVREALVIVHVFGSIHYTLTHMGYGYATLRCCMMQVRFQCSSSTGAIARYARSGQIHNVRKVFDETPHSHRTIASWNAIVAAHFEAHQPREAILLFEKMPERNTVSWNGMISGYVKNGMITEARKIFDTMPDRNVVFVDFDGSRLRARGHGRRSRTALLGNAPQECGVVDSYAWWVVERVSC 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi235g00029 652 Pfam PPR repeat 545 573 IPR002885 -
Sebi235g00029 652 Pfam PPR repeat 575 605 IPR002885 -
Sebi235g00029 652 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 573 607 IPR002885 -
Sebi235g00029 652 SUPERFAMILY L domain-like 27 287 - -
Sebi235g00029 652 Gene3D Tetratricopeptide repeat domain 505 610 IPR011990 GO:0005515
Sebi235g00029 652 PANTHER RECEPTOR-LIKE PROTEIN 55 43 340 - -
Sebi235g00029 652 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 29 190 - -
Sebi235g00029 652 ProSiteProfiles Protein kinase domain profile. 342 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi235g00029 652 Gene3D Ribonuclease Inhibitor 292 347 IPR032675 -
Sebi235g00029 652 FunFam receptor-like protein kinase FERONIA 332 417 - -
Sebi235g00029 652 Gene3D Ribonuclease Inhibitor 190 291 IPR032675 -
Sebi235g00029 652 Gene3D Ribonuclease Inhibitor 28 189 IPR032675 -
Sebi235g00029 652 Gene3D Phosphorylase Kinase; domain 1 348 418 - -
Sebi235g00029 652 Pfam Protein tyrosine and serine/threonine kinase 347 427 IPR001245 GO:0004672|GO:0006468
Sebi235g00029 652 NCBIfam pentatricopeptide repeat 575 606 IPR002885 -
Sebi235g00029 652 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 214 308 - -
Sebi235g00029 652 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Sebi235g00029 652 SUPERFAMILY Protein kinase-like (PK-like) 347 503 IPR011009 -
Sebi235g00029 652 SUPERFAMILY L domain-like 264 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi235g00029 Sebi-Chr235 504204 516427 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi235g00029 431 475 Receptor kinase-like Gene Family AT5G01950 57.143 2.23e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Sebi235g00029 PK_Tyr_Ser-Thr 1.6e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi235g00029 - - gmx:100815005 543.117