Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi235g00019 ATGCCACAGTCCTACTTTGCCACTCTACCAATTTTCCTTCTCTTGGTTGTGTTTCATAAAACTATAGCTGATCTACATTCAGAAAAGCAAGCCCTTCTTGATTTTGCTGCTGCAGTTCATCATGGTAACAAAGTCAATTGGAACTCTAGTACCTCAATCTGCACTTCTTGGGTGGGAGTTACATGTAGTTCTGATGGCTCTCATGTGGTTTCTGTGAGGCTTCCAGGTGTTGGATTGAGAGGTTCTCTCCCAGAAAAAACAATTGGTAAACTAAATGGTCTCATCAGTCTCAGTCTTAGGTCTAATAGCTTGAATGGGAATCTTCCACCTGACATATTTTCCCTTCCTTCTCTACGCTTTATATATCTACAACACAACAATTTTTCAGGTGATATTCCTGATTTTCTGCCACCACAGCTTATCTTTCTTGATTTATCTTACAACTCTTTCACAGGACAAATTCCAGGGTTAATCCAAAACTTGACATATCTAATAGGATTGAATCTCCAAAATAACTCTTTGAGAGGACCTATTCCTGATGTTAACCTTCCTAGCCTTAAGAATTTGGATTTGAGCTTCAATTATCTGAATGGTTCAGTTCCTTCAGGGCTTCATAAGTTTCCTGCCTCCTCATTTAAAGGGAATTTTATGTTATGTGGAGAACCTTTGGAACAATGTTCTTCATTTTCTCCTACTACCACTTTGTCTCCACTAATAGTATCCCAGAAACCAAGTGATCTCTCAAACAAGAAGCTGAGTACAGGGGCAAAAGTTGCTATTGCTTTGGGGGCTTTCACACTGCTGTTTCTTCCAGCTGTTGTAGTGGTGTTTTGCTGTTTCAAGAAAAGGGTAGGTGAACAGAATGTGGCACCTAAAGAGAAGGGTGAGAAGCTTAGGGAGGGCTTTGGGAGTGGGGTGCAAGAACCTGAGAGAAACAAGCTGATATTTTTTGAAGGTTGTTCTCATAATTTTGATCTTGAGGATTTGTTAAGAGCCTCAGCTGAAGTGCTTGGGAAGGGAAGTTGTGGAACAACATATAAAGCTATCTTGGAGGAAGGGACAATAGTGGTAGTGAAGAGGTTAAAAGAAGTGACCATAGGGAAAAAAGAATTTGAACAGCAAATGGAGATTGTCCAAAGGCTTGATCGCCACCCAAATGTGGTTACCCTTCGTGCTTACTATTATTCCAAGGATGAAAAACTCATGGTTTATGACTACTTCACATCTGGCAGCTTTTCCAAGTTATTGCATGGAACAAGGGAAACTGGACGAACTCCACTAGATTGGGATACTAGATTGAAGATCATGGCAGGAGCTGCTAGGGGCATTGCCCATATCCACTCAGCCAATGGAAGGAAATTTGTCCATGGCAATATAAAATCATCTAATGTGCTTCTCTCAATAGATCTTCAAGGCTGGATATCAGATTTTGGCTTAACTCCTCTAACAAGTTTCTCTGTCTCCACCAGAAGTCCAGGCTACCGGGCACCTGAGGTTATTGAAACCAGAAAATCCACCCAAAAATCTGATGTATACAGCTTTGGTGTTCTCCTTCTTGAGATGCTGACTGGCAAAACACCAATTCAGTATTCAGGGCATGATGATGTGGTTGACCTTCCAAAGTGGGTTCAATCTGTTGTTAGAGAGGAATGGACTGCTGAAGTGTTTGATCTTGAGCTAATGAGATATCCAAACATTGAAGAAGAACTAGTGCAGATGCTGCAACTAGCAATGGCATGTGTAGCAATGACACCTGACACTAGACCTTCCATGGAAGAAGTTGTAAGGATAATTGAAGACATAGCATCCATTTCTTAG 1818 0.4109 MPQSYFATLPIFLLLVVFHKTIADLHSEKQALLDFAAAVHHGNKVNWNSSTSICTSWVGVTCSSDGSHVVSVRLPGVGLRGSLPEKTIGKLNGLISLSLRSNSLNGNLPPDIFSLPSLRFIYLQHNNFSGDIPDFLPPQLIFLDLSYNSFTGQIPGLIQNLTYLIGLNLQNNSLRGPIPDVNLPSLKNLDLSFNYLNGSVPSGLHKFPASSFKGNFMLCGEPLEQCSSFSPTTTLSPLIVSQKPSDLSNKKLSTGAKVAIALGAFTLLFLPAVVVVFCCFKKRVGEQNVAPKEKGEKLREGFGSGVQEPERNKLIFFEGCSHNFDLEDLLRASAEVLGKGSCGTTYKAILEEGTIVVVKRLKEVTIGKKEFEQQMEIVQRLDRHPNVVTLRAYYYSKDEKLMVYDYFTSGSFSKLLHGTRETGRTPLDWDTRLKIMAGAARGIAHIHSANGRKFVHGNIKSSNVLLSIDLQGWISDFGLTPLTSFSVSTRSPGYRAPEVIETRKSTQKSDVYSFGVLLLEMLTGKTPIQYSGHDDVVDLPKWVQSVVREEWTAEVFDLELMRYPNIEEELVQMLQLAMACVAMTPDTRPSMEEVVRIIEDIASIS 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi235g00019 605 Gene3D Phosphorylase Kinase; domain 1 300 406 - -
Sebi235g00019 605 CDD STKc_IRAK 337 601 - -
Sebi235g00019 605 FunFam Leucine-rich repeat receptor-like protein kinase 138 226 - -
Sebi235g00019 605 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 407 605 - -
Sebi235g00019 605 Gene3D Ribonuclease Inhibitor 26 138 IPR032675 -
Sebi235g00019 605 Gene3D Ribonuclease Inhibitor 139 228 IPR032675 -
Sebi235g00019 605 Gene3D Transferase(Phosphotransferase) domain 1 408 604 - -
Sebi235g00019 605 FunFam Leucine-rich repeat receptor-like protein kinase 27 137 - -
Sebi235g00019 605 PANTHER OS05G0588300 PROTEIN 10 601 - -
Sebi235g00019 605 SUPERFAMILY L domain-like 40 207 - -
Sebi235g00019 605 SUPERFAMILY Protein kinase-like (PK-like) 335 597 IPR011009 -
Sebi235g00019 605 Pfam Leucine rich repeat N-terminal domain 27 63 IPR013210 -
Sebi235g00019 605 ProSiteProfiles Protein kinase domain profile. 331 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi235g00019 605 FunFam pollen receptor-like kinase 1 300 406 - -
Sebi235g00019 605 Pfam Protein kinase domain 334 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi235g00019 Sebi-Chr235 303477 306085 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi235g00019 11 601 Receptor kinase-like Gene Family AT5G58300 61.167 0.0 733
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Sebi235g00019 Pkinase 9.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi235g00019 - - gmx:100796675 1004.2