LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi235g00015	ATGTGTTTGGTATTAGCTGTTGAACTTGTACTAGCAGCGGATTTTAAGCCTACAGATAAAATCCTGCTGAATTGTGGAGGTCCTCCAACTAGTTCTGATACTGATGGCCGTGAATGGACCACTGATATTGGTTCCAAGTTTGGTTCCTCTGCTGGGAATTCAAATTCCAACACATCAACAGCAGCAACACAAGACCCTGCCGTCCCTCAGGTGCCTTACATGACGGCTCGCGTGTTTCGCAAGCCTTATACTTACAGTTTTCCGGTGGCATCTGGTTGGAAATTCCTCAGGCTGTACTTTTATTCAGCTTCTTATAATGGCCTCAATGCATCGGATGCGCTTTTCGCTGTGTCAGCGCAATCCTACACCTTGCTTAGGAACTTCAGTGTTTCTCAGACTGCCTTGGCTTTGAATTATGCCTACATTGTGAAGGAATACTCCATTAATGTTGAAGGGGGAACCTTGAATGTGACTTTCACTCCATCTACCAATGCCTCTAATGCCTATGCATTTGTTAATGGGATTGAGGTTGTGTCCATGCCTGATATTTATACTTCTACTGATGGAACTACCATGATTGTGGGTTCAAATACTCCTTTCACCATTGACAACAGCACTGCACTTGAGAATCTTTATAGGTTAAATGTGGGTGGGAATGATATCTCGCCTTCCCATGATACCGGCATGTTTAGGTCATGGTCTGATGATATGCCTTACCTCTTTGGAGCTGCATTTGGAGTCACTGAGCCTGCTGATCCAGAAGTGAAGATTGAGTATCCTCCAAGCACACCAACTTACATTGCTCCTACTGATGTCTACACTACAGCTAGATCAATGGGCCCAAATGCTGATATCAACATGAATTACAACTTGACATGGATTTTCTCCATTGATTCTGGGTTTTCCTATCTTGTGAGACTCCATTTTTGTGAGGGCACTACAAATGTAACCAAGATTAATCAAAGAGTGTTTAATATATTCCTCAATAATCAAACTGCTGCGGATGGGGCTGATGTTATAGCCTGGGCAGGGGAATTTAGCCTTTCACATGCAAATGGGGTTCCAGTGCATAAAGATTATGTTGTATTTGTTCCTAATGGGGAACCACGGCAGGACTTGTGGCTTGCACTGCATCCAAATCCAACTTCAAAGCCCCAGCTTTATGATGCAATCGTGAATGGAGTGGAGATATTCAAAATCAGTGATAGTACTACAGGTAATCTGGCAGGGACAAATCCTATTCCTCCTCCAGTGCAAGACATAATTGATCCTTCATTGGCTAGGACATCTAGTCATGGTAAATCAAAGAATCAGGCAGGAATAATCGCAGGATGTGTTGGTGGAGGAGTTGTTTTATTGCTTGTGATTGGGCTATTTGCTTTTGCTGCATCCCGTCGCCGTAGGCATGGAAAAGATTCTAGTGCAAGTGAAGGGCCATCTGGCTGGCTTCCACTTTCTCTTTATGGTAATTCACACTCTGCAGCTTCTGCCAAGACCAACACAACAGGAAGTTATGCATCCTCCCTCCCATCAAACCTTTGTCGTCATTTCTCATTTGCTGAAATCAAGGCTGCCACAAACAACTTCGATGAGGCTTTACTCCTTGGTGTGGGAGGATTTGGTAAGGTTTACAAAGGAGAAGTTGATGGTGGATCAACCAAAGTTGCAATCAAACGTGGGAATCCACTCTCTGAGCAAGGGGTGCATGAGTTCCAAACTGAGATTGAAATGCTCTCTAAACTTCGTCACCGCCACCTTGTTTCACTGATTGGTTATTGTGAAGAAAACACTGAAATGATCCTTGTCTATGATTACATGGCCTATGGAACACTCAGGGAGCATCTATACAAAACCCAGAAACCTCCACTGCCTTGGAAGCAAAGGCTTGAGATATGCATTGGAGCTGCTCGGGGTTTACACTATCTACACACTGGTGCTAAACACACTATCATCCACCGTGATGTGAAGACAACAAACATTTTACTAGATGAGAAGTGGGTGGCTAAGGTTTCTGATTTTGGATTGTCTAAAACAGGTCCTACATTGGATAACACACATGTAAGTACTGTAGTAAAGGGTAGTTTTGGATACTTGGATCCAGAATACTTCAGGAGGCAGCAACTGACTGATAAATCTGATGTGTACTCATTTGGTGTTGTTCTATTTGAGATATTGTGTGCTCGCCCAGCTTTGAACCCAACACTTCCTAAGGAGCAAGTGAGTCTAGCTGAATGGGCAGCTCATTGCTACAAGAAAGGCATTCTTGACCAAATCATTGATCCTTATCTGAAGGGCAAGATAGCTCCTGAATGCTTTAAGAAGTTTGCTGAGACTGCAATGAAGTGTGTGGCTGACCAAGGCATTGAAAGGCCATCCATGGGTGATGTCTTGTGGAACCTTGAATTTGCTTTGCAGCTGCAAGAAAGTGCAGAGGAAAGTGGCAATGGATTTGGTGGAATACAGAGTGAAGATGAGCCATTATTTAAAGGAAAGAAGGATTCAGATGGATTGGCTGTTTATGATGGTAATGTGACTGACTCCAAAAGCAGTGGCATGTCTATGAGCATTGGAGGTAGAAGCTTGGCTAGTGAAGACTCTGATGGGTTAACACCAAGTGCTGTGTTCTCCCAAATCATGAATCCAAAAGGGCGTTAA	2655	0.4358	MCLVLAVELVLAADFKPTDKILLNCGGPPTSSDTDGREWTTDIGSKFGSSAGNSNSNTSTAATQDPAVPQVPYMTARVFRKPYTYSFPVASGWKFLRLYFYSASYNGLNASDALFAVSAQSYTLLRNFSVSQTALALNYAYIVKEYSINVEGGTLNVTFTPSTNASNAYAFVNGIEVVSMPDIYTSTDGTTMIVGSNTPFTIDNSTALENLYRLNVGGNDISPSHDTGMFRSWSDDMPYLFGAAFGVTEPADPEVKIEYPPSTPTYIAPTDVYTTARSMGPNADINMNYNLTWIFSIDSGFSYLVRLHFCEGTTNVTKINQRVFNIFLNNQTAADGADVIAWAGEFSLSHANGVPVHKDYVVFVPNGEPRQDLWLALHPNPTSKPQLYDAIVNGVEIFKISDSTTGNLAGTNPIPPPVQDIIDPSLARTSSHGKSKNQAGIIAGCVGGGVVLLLVIGLFAFAASRRRRHGKDSSASEGPSGWLPLSLYGNSHSAASAKTNTTGSYASSLPSNLCRHFSFAEIKAATNNFDEALLLGVGGFGKVYKGEVDGGSTKVAIKRGNPLSEQGVHEFQTEIEMLSKLRHRHLVSLIGYCEENTEMILVYDYMAYGTLREHLYKTQKPPLPWKQRLEICIGAARGLHYLHTGAKHTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPTLDNTHVSTVVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEILCARPALNPTLPKEQVSLAEWAAHCYKKGILDQIIDPYLKGKIAPECFKKFAETAMKCVADQGIERPSMGDVLWNLEFALQLQESAEESGNGFGGIQSEDEPLFKGKKDSDGLAVYDGNVTDSKSSGMSMSIGGRSLASEDSDGLTPSAVFSQIMNPKGR	884

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi235g00015	884	SMART	serkin_6	529	803	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi235g00015	884	MobiDBLite	consensus disorder prediction	813	884	-	-
	Sebi235g00015	884	Gene3D	Transferase(Phosphotransferase) domain 1	606	817	-	-
	Sebi235g00015	884	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	650	662	IPR008271	GO:0004672\|GO:0006468
	Sebi235g00015	884	FunFam	Receptor-like protein kinase FERONIA	501	605	-	-
	Sebi235g00015	884	Gene3D	Phosphorylase Kinase; domain 1	490	605	-	-
	Sebi235g00015	884	MobiDBLite	consensus disorder prediction	843	877	-	-
	Sebi235g00015	884	ProSiteProfiles	Protein kinase domain profile.	529	803	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi235g00015	884	FunFam	FERONIA receptor-like kinase	20	181	-	-
	Sebi235g00015	884	Pfam	Protein tyrosine and serine/threonine kinase	535	797	IPR001245	GO:0004672\|GO:0006468
	Sebi235g00015	884	CDD	STKc_IRAK	535	801	-	-
	Sebi235g00015	884	PANTHER	OS03G0124300 PROTEIN-RELATED	11	472	IPR046957	GO:0004672
	Sebi235g00015	884	ProSitePatterns	Protein kinases ATP-binding region signature.	535	558	IPR017441	GO:0005524
	Sebi235g00015	884	FunFam	Receptor-like protein kinase FERONIA	606	816	-	-
	Sebi235g00015	884	Pfam	Malectin-like domain	23	400	IPR024788	-
	Sebi235g00015	884	FunFam	FERONIA receptor-like kinase	206	401	-	-
	Sebi235g00015	884	SUPERFAMILY	Protein kinase-like (PK-like)	503	802	IPR011009	-
	Sebi235g00015	884	Gene3D	-	21	181	-	-
	Sebi235g00015	884	Gene3D	-	207	401	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi235g00015	Sebi-Chr235	198476	201130	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi235g00015	4	884	Receptor kinase-like Gene Family	AT3G51550	74.972	0.0	1341

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Sebi235g00015		Malectin_like	1.5e-39	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi235g00015	-		-	gmx:100499644	1516.52