Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi235g00010 ATGGCTTCTCTGCTTCCTACAACTGCAACTACTTCACTTCAACATACTCACACAATCTGCTTCTCTCCTCTGAAACCCACCACCCCAAATAACATTTCTTTCTTATCTAACCGTTTCAAGACTAATAACTCTTCAAAGTGCAGTGCTTTTTTTGATAACATCCCCAAAGACTTGTTGGAGAACACTTTTTATGTGGACCAATTTCCTGTATTCCGATCAGTGTTATTGAAATTTCAGAGTGTAAGTGAGGACTTATCAGACATGCAGAGATGGGGGTTTGTGATTTTTGCTGCCATGACATGGTTTTACTTAACTGCAAGACCAGGTGTTCTTGTTGGAGCCATTGATGCATTCCTTTTGGCTCCAATGCAACTGGTTTTGGACAGTTTATCTGGAAGGAGAAATCTGAAGAGGAAAGATTTTCTGATTGGAGATAAGCTAGGTGAAGGATCATTTGGTGTTGTTTATTCAGGTGTTTTGGTCCCAAAGAATGTAGATGTAGAAGAGAGGATGCAGATGAGTGGAAGAGGCAAGGGGACAAAATTGGATGCCAAATCTAAGGATAAAGTCATTCTTAAAAAGGTAAAGGTTGGAATTGAAGGGGCTGAAGAATTTGGTGATTTTGAGGAGTGGTTCAATTATAGACTCTCTAGAGCAGCTCCTGAAACATGTGCCAAGTTCCTTGGAAGTTTTGTAGCTGATAAAAGCAATTCACAGTTCACAAAAGGGGGAAAATGGCTTGTTTGGAAGTTTGAGGGAAACCGCTCTCTTGCTGATTACATGGCAGATAGGAACTTCCCTTCAAACATAGAGTCTGTCATGTTTGGAAGTGTCTTGCAAGGTGTAGACTCTTCTAAACGAAATGCATTAATCATCAAGCAGATAATGCGGCAGATCATTACATCTCTTAAGAAAATTCACAACACAGGCATTGTTCACAGGGATGTAAAGCCTGCTAACTTGGTGGTTACCAAATTGGGGCAGATCAAGCTCATTGATTTTGGTTCAGCAACAGACCTGAGGATTGGAAAGAATTATGCTCCCAATTGTAACCCTTTGGATCGTGACTACTGTCCACCTGAACTGTATGTGCTGCCAGAAGAAACATCAAGTCTTCCACCAGAGCCAATTGCAGCTTTACTTTCACCAATCTTGTGGCAGTTAAACAGTCCTGATCTGTTTGATATGTATTCTGCTGGGATTGTACTCTTGCAAATGGCTATACCAACCTTAAGGTCTCCAGCTGCTTTGAAGAATTTCAATTTGGAATTAAGAACATATGGATATGATTTGAACAAATGGAGGGACTCTACTCGCATGAGGTCTGATTTCCAAATCCTTGATAGTGACTCAGGTAGAGGGTGGGACTTAGCAACGAAGCTTATTTCCAAAAGAGGTTCCCAAAGAAGAGGACGTTTATCTGCTTCTGCTGCTTTGAGGCATCCTTATTTCCTTCTAGGTGGTGATCAGGCAGCTGCAGTCCTTTCAAAATTAAGCTTAAGCACAAATTGA 1512 0.4101 MASLLPTTATTSLQHTHTICFSPLKPTTPNNISFLSNRFKTNNSSKCSAFFDNIPKDLLENTFYVDQFPVFRSVLLKFQSVSEDLSDMQRWGFVIFAAMTWFYLTARPGVLVGAIDAFLLAPMQLVLDSLSGRRNLKRKDFLIGDKLGEGSFGVVYSGVLVPKNVDVEERMQMSGRGKGTKLDAKSKDKVILKKVKVGIEGAEEFGDFEEWFNYRLSRAAPETCAKFLGSFVADKSNSQFTKGGKWLVWKFEGNRSLADYMADRNFPSNIESVMFGSVLQGVDSSKRNALIIKQIMRQIITSLKKIHNTGIVHRDVKPANLVVTKLGQIKLIDFGSATDLRIGKNYAPNCNPLDRDYCPPELYVLPEETSSLPPEPIAALLSPILWQLNSPDLFDMYSAGIVLLQMAIPTLRSPAALKNFNLELRTYGYDLNKWRDSTRMRSDFQILDSDSGRGWDLATKLISKRGSQRRGRLSASAALRHPYFLLGGDQAAAVLSKLSLSTN 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi235g00010 503 Pfam Protein kinase domain 291 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi235g00010 503 SMART serkin_6 141 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi235g00010 503 Gene3D Transferase(Phosphotransferase) domain 1 282 486 - -
Sebi235g00010 503 SUPERFAMILY Protein kinase-like (PK-like) 137 485 IPR011009 -
Sebi235g00010 503 ProSitePatterns Serine/Threonine protein kinases active-site signature. 311 323 IPR008271 GO:0004672|GO:0006468
Sebi235g00010 503 Gene3D Phosphorylase Kinase; domain 1 128 251 - -
Sebi235g00010 503 ProSiteProfiles Protein kinase domain profile. 141 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi235g00010 503 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 52 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi235g00010 Sebi-Chr235 140570 143774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi235g00010 141 340 MAP Kinase Kinase Kinase AT3G13530 25.616 7.90e-11 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Sebi235g00010 Pkinase 1.6e-20 CL0016