Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi234g00102 ATGGATGTTGCGGAGGTTGAAGAAAATCTATTCGCTATTAGTGATGCCAAGTTACATGGACAAATGTGCAAGGCTCTTTCTATAATATATTGCAAAGTATTGTCAATATTTCCTTCTTTAGAAGCAGCTAGACCTAGGAGTAAAACTGGAATTCAGGCATTGTGTTCATTGCATGTAGCCTTAGAGAAAGCCAAGAGTGTTCTTCAACACTGCTCAGAGTGTAGTAAACTCTACTTGGCTGTTACTGGGGATTCCGTTCTTCTAAAATTTGAGAAGGCTAAATGTGCTCTTGAAGATAGTCTTAGACGAGTGGAAGATATTGTTCCACAATCTATTGGGTGTCAGGTTCAAGAGATTGTGAATGAATTTGAGAGTGTGGAATTTGCTCTTGACCCATCAGAGAAGCAAGTTGGTGATGATTTAATTGCATTGCTTCAGCAGGGGAGAAAGTTTAATGACTCTAGTGACAGTAATGAGCTTGAATCTTTTCACCAGGCTGCTACTAGACTTGGAATCACATCTTCAAGAGCAGCTCTTGCTGAAAGAAGAGCTCTCAAGAAACTTATAGACAGGGCTCGGGCTGAGGAAGACAAGCGGAAGGAATCAATTGTTACATATCTTTTACATCTTATGAGGAAATACTCCAAGTTATTTAGAAGTGAGTTCTCAGATGACAATGATTCTCAGGGTTCTGCACCTTGTTCTCCCACTGTTCTAGGATCTATTGAGGATGGTATTCCTGGTGGTCAATGTCAAGCTTTTGACAGACAACTATCAAAACTTAGCTCCTTTAATTTCAAGCAAAATAATAATAGGGAATCGGGGCAGATGCCTGTTCCACCTGAAGAGTTAAGATGTCCAATATCTCTGCAGCTCATGTATGATCCGGTTATCATTGCTTCTGGCCAAACATATGAAAGGGTTTGCATAGAGAAATGGTTCAGTGATGGGCACAACAACTGCCCAAAGACCCAACAGAAACTTGAGCATCTTTGTTTGACTCCTAATTACTGTGTTAAGGGTCTTGTTGCTAGTTGGTGTGAACAAAATGGAGTTCCTGTTCCTGAAGGCCCTCCTGAATCTCTTGATCTTAACTACTGGAGATTGGTATTATCAGAGTCTGAATCTACAAATTCGAGATCTGTAAATAGTGTCAGCTCTTGCAAGTTGAAGGGTGTCAAAGTGGTTCCTTTAGAGGAGAGTGGTATCTCAGAGGAATCTGGGGAAAATGGAACTGAAAGTGTGTCTGCACAAGAGGAAGACACTGAGCAGTATTTTAGTTTTCTGAAAGTCTTGACTGAGGGGGACAATTGGGAGAGGAAATGTGAAGTGGTAGAACAGTTAAGGCTGTTTCTGAGGGATGATGAGGAAGCCAGGATTTTTATGGGGGCTAATGGGTTTGTTGAAGCACTTCTACAGTTTTTACAATCAGCTGTGCATGAAGGAGATTTGATGGCTCAGGAAAGTGGAGCAATGGCTCTCTTCAACCTGGCTGTGAATAACAACAGGAATAAGGAAATCATGTTATCAGCTGGAGTATTATCATTGTTGGAGGAAATGATTTCTAACACTAGTTCCTATGGTTGTGCAAGCGCTCTATATCTGAATCTCTCTTGCCTAGAAGAAGCCAAACCTATGATTGGCATGAGTAATGCTGTACAGTTCCTCGTCCAGCTTCTTCAATCTGACTCTGATGGTCAATGCATGCAAGATTCTCTTCATGCTCTCTATAATCTTTCTACTGTGCCCTCCAATATCCCATACCTCCTTTCATCTGGCATAATTAATGGTCTACAATCCCTTCTTGTAGGCCAGGGTGATTGCGTGTGGACAGAAAAATGCATAGCTGTTTTGATAAATTTAGCCACTTCTCAAGTTGGAAGGGAGGAAATGGTATCAACTCCTGGACTCATCGGTGCATTGGCTTCGATATTGGACACCGGTGAGCTCCTAGTGCAGGAACAAGCTGTCTCTTGTCTCCTAATTTTGTGCAACAGAAGTGAGATATGTAGCGAGATGGTCCTGCAAGAAGGGGTTATACCTGCATTGGTATCAATATCAGTGAATGGGACTCCAAGAGGGAGGGAAAAAGCACAGAAACTTTTGATGCTGTTCCGAGAGCAGCGACAACGAGACCATTCACCAGTTAAGACACATCAGTGCCCACCTGAAACTAGTGATTTGTCTGTGCCGCCTGGTGAAATGAAACCTCTATGTAAATCCATGTCTAGAAGAAAGACTGGGAAAGCTTTTGGCTTTTTCTGGAAAAGCAAGAGCTATTCTATACACCAGTGTTAG 2298 0.4199 MDVAEVEENLFAISDAKLHGQMCKALSIIYCKVLSIFPSLEAARPRSKTGIQALCSLHVALEKAKSVLQHCSECSKLYLAVTGDSVLLKFEKAKCALEDSLRRVEDIVPQSIGCQVQEIVNEFESVEFALDPSEKQVGDDLIALLQQGRKFNDSSDSNELESFHQAATRLGITSSRAALAERRALKKLIDRARAEEDKRKESIVTYLLHLMRKYSKLFRSEFSDDNDSQGSAPCSPTVLGSIEDGIPGGQCQAFDRQLSKLSSFNFKQNNNRESGQMPVPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHNNCPKTQQKLEHLCLTPNYCVKGLVASWCEQNGVPVPEGPPESLDLNYWRLVLSESESTNSRSVNSVSSCKLKGVKVVPLEESGISEESGENGTESVSAQEEDTEQYFSFLKVLTEGDNWERKCEVVEQLRLFLRDDEEARIFMGANGFVEALLQFLQSAVHEGDLMAQESGAMALFNLAVNNNRNKEIMLSAGVLSLLEEMISNTSSYGCASALYLNLSCLEEAKPMIGMSNAVQFLVQLLQSDSDGQCMQDSLHALYNLSTVPSNIPYLLSSGIINGLQSLLVGQGDCVWTEKCIAVLINLATSQVGREEMVSTPGLIGALASILDTGELLVQEQAVSCLLILCNRSEICSEMVLQEGVIPALVSISVNGTPRGREKAQKLLMLFREQRQRDHSPVKTHQCPPETSDLSVPPGEMKPLCKSMSRRKTGKAFGFFWKSKSYSIHQC 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi234g00102 765 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 353 IPR013083 -
Sebi234g00102 765 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Sebi234g00102 765 PANTHER U BOX DOMAIN-CONTAINING 21 709 - -
Sebi234g00102 765 Coils Coil 175 195 - -
Sebi234g00102 765 SUPERFAMILY ARM repeat 428 707 IPR016024 -
Sebi234g00102 765 FunFam RING-type E3 ubiquitin transferase 279 353 - -
Sebi234g00102 765 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 551 594 IPR000225 GO:0005515
Sebi234g00102 765 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Sebi234g00102 765 Gene3D - 399 720 IPR011989 -
Sebi234g00102 765 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Sebi234g00102 765 MobiDBLite consensus disorder prediction 710 733 - -
Sebi234g00102 765 SMART arm_5 455 499 IPR000225 GO:0005515
Sebi234g00102 765 SMART arm_5 540 581 IPR000225 GO:0005515
Sebi234g00102 765 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 466 512 IPR000225 GO:0005515
Sebi234g00102 765 CDD RING-Ubox_PUB 281 333 IPR045210 -
Sebi234g00102 765 SUPERFAMILY RING/U-box 271 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi234g00102 Sebi-Chr234 1367578 1371528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi234g00102 1 764 U-box Gene Family AT1G24330 67.224 0.0 1053
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi234g00102 - - gmx:100794099 1335.86