Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sebi234g00088 | ATGGACATCACTTGGCCTCCAAGGTACTACACCTGCACCTTTTGCGGAAGGGAGTTCCGTTCAGAACAAGCTCTTGGTGGCCACATGAACGTCCACCGTCGTGACCGTGCTCGCCTCCACCACCAACCACACTACCCTCCTTCACCCATTCCCACATTACCATCATTCATTAACATCCCACTTCAGGAGCTTGTTGCAAATGGTGTCTTGTGCTTTCTCTACCATTTGGCAAGCCCTAATGCTCCTCCATTCCCACTATTACTGAATGCATGTGGTGATCTAGTTTTCCTTCAGAAGAAAATGGGCTTGTATGATTATTTCTTGTCATATTGA | 333 | 0.4745 | MDITWPPRYYTCTFCGREFRSEQALGGHMNVHRRDRARLHHQPHYPPSPIPTLPSFINIPLQELVANGVLCFLYHLASPNAPPFPLLLNACGDLVFLQKKMGLYDYFLSY | 110 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sebi234g00088 | 110 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 10 | 37 | IPR013087 | - | |
Sebi234g00088 | 110 | PANTHER | OS07G0101800 PROTEIN | 3 | 50 | - | - | |
Sebi234g00088 | 110 | Pfam | C2H2-type zinc finger | 9 | 34 | - | - | |
Sebi234g00088 | 110 | SMART | c2h2final6 | 10 | 32 | IPR013087 | - | |
Sebi234g00088 | 110 | Gene3D | Classic Zinc Finger | 7 | 45 | - | - | |
Sebi234g00088 | 110 | SUPERFAMILY | beta-beta-alpha zinc fingers | 7 | 37 | IPR036236 | - | |
Sebi234g00088 | 110 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 12 | 32 | IPR013087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Sebi234g00088 | Sebi-Chr234 | 1072063 | 1072395 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Sebi234g00088 | 5 | 106 | C2H2 Transcription Factor Family | AT5G06070 | 42.157 | 1.52e-21 | 83.6 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Sebi234g00088 | zf-C2H2_6 | 1.9e-08 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sebi234g00088 | - | - | cam:101504981 | 120.553 |