Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi234g00088 ATGGACATCACTTGGCCTCCAAGGTACTACACCTGCACCTTTTGCGGAAGGGAGTTCCGTTCAGAACAAGCTCTTGGTGGCCACATGAACGTCCACCGTCGTGACCGTGCTCGCCTCCACCACCAACCACACTACCCTCCTTCACCCATTCCCACATTACCATCATTCATTAACATCCCACTTCAGGAGCTTGTTGCAAATGGTGTCTTGTGCTTTCTCTACCATTTGGCAAGCCCTAATGCTCCTCCATTCCCACTATTACTGAATGCATGTGGTGATCTAGTTTTCCTTCAGAAGAAAATGGGCTTGTATGATTATTTCTTGTCATATTGA 333 0.4745 MDITWPPRYYTCTFCGREFRSEQALGGHMNVHRRDRARLHHQPHYPPSPIPTLPSFINIPLQELVANGVLCFLYHLASPNAPPFPLLLNACGDLVFLQKKMGLYDYFLSY 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi234g00088 110 ProSiteProfiles Zinc finger C2H2 type domain profile. 10 37 IPR013087 -
Sebi234g00088 110 PANTHER OS07G0101800 PROTEIN 3 50 - -
Sebi234g00088 110 Pfam C2H2-type zinc finger 9 34 - -
Sebi234g00088 110 SMART c2h2final6 10 32 IPR013087 -
Sebi234g00088 110 Gene3D Classic Zinc Finger 7 45 - -
Sebi234g00088 110 SUPERFAMILY beta-beta-alpha zinc fingers 7 37 IPR036236 -
Sebi234g00088 110 ProSitePatterns Zinc finger C2H2 type domain signature. 12 32 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi234g00088 Sebi-Chr234 1072063 1072395 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi234g00088 5 106 C2H2 Transcription Factor Family AT5G06070 42.157 1.52e-21 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi234g00088 zf-C2H2_6 1.9e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi234g00088 - - cam:101504981 120.553