Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi234g00086 ATGGAGTACCTATTATTCTTCAATGCAAAAGCAACAGAAAATCCAAAATTACAACCACCAAACAGGAGTGAAGTGAACAGGGAAATCAATGTCAGGTTGTTTGATACATCTGGTGGCAGTGCTTGTTCTGGGTCTGAGCTAATAGATGCTTCTTCATCAAGGAGCTCAAAATCAGCTTCCATCAGTTCATCATCAAATAAGGATAGCAAAACATCTATAATTACTTTTGAAAGTTCCCAAGATGATTCCAGTGCTAAAAAAGAATTATCTAAAGAGGAGCCAGTTGAAACTTCTCATGCACCAGAGCTCACTCTAAAGCTTGGTAAAAGGTTGTACTTTGAGGATGTGTGTCCAGGAAGTGATTCCAGGAACCTATCTTTCTCTGGGGCTCCCACTTTATCTTTAAATACTGGAAAGAAATGTAAGTCCAATGGTCAGCGCATACAATATCCACGATGCCAGGTTGAAGGCTGTGGCCTTGACCTTTCATCAGCTAAAGATTACCATCGCAAACATAGAGTTTGTGACAATCATTCCAAATCCCCTAAGGTGATTATAGCTGGTTTGGAACGTCGATTTTGCCAGCAATGTAGCAGGACTGCTACAAATTTAGCCTGGCAAGGTTTACATAGCAGCAAGCTCCCCCAGACAAAAGATTTTCTCTTGAAACCTGCAAAAGCCAATAATGAGATACCAAGTATTGTCACTATGCTTTCTGGTGATTCCAACGTCCCTTTTACATCCAAAGGTGTTGCAACCAAGAGTACTAATCCAGATATAGAAGACTCCATCACCTCCTCTGATCCAAATGCTACACAAGATTTTCACCGTGCTCTCTCTCTTCTGTCAAACAATTCATGGGGTTCATATGAGACTAAATCCATTTCTCTAGAACACTCCAATCACACAACCAGTACCTCTCAGCCCATAATACATACAACGGGTCAGCGCTTTCCTCCTACTCCATCTGAATATTGGCATAGTGATCAACAAGTGAATTCCGGCACATGGATCTCATACTCAAATTGTGATGATAGTAATCGCTTTCATGAATTTCAACTGTTCAGAGAACCTTATGAGTCTGGATTTCCTTATGACCAGTTGGATTAA 1110 0.4072 MEYLLFFNAKATENPKLQPPNRSEVNREINVRLFDTSGGSACSGSELIDASSSRSSKSASISSSSNKDSKTSIITFESSQDDSSAKKELSKEEPVETSHAPELTLKLGKRLYFEDVCPGSDSRNLSFSGAPTLSLNTGKKCKSNGQRIQYPRCQVEGCGLDLSSAKDYHRKHRVCDNHSKSPKVIIAGLERRFCQQCSRTATNLAWQGLHSSKLPQTKDFLLKPAKANNEIPSIVTMLSGDSNVPFTSKGVATKSTNPDIEDSITSSDPNATQDFHRALSLLSNNSWGSYETKSISLEHSNHTTSTSQPIIHTTGQRFPPTPSEYWHSDQQVNSGTWISYSNCDDSNRFHEFQLFREPYESGFPYDQLD 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi234g00086 369 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 51 199 IPR044817 GO:0003677
Sebi234g00086 369 Pfam SBP domain 153 200 IPR004333 GO:0003677
Sebi234g00086 369 MobiDBLite consensus disorder prediction 36 80 - -
Sebi234g00086 369 ProSiteProfiles Zinc finger SBP-type profile. 150 227 IPR004333 GO:0003677
Sebi234g00086 369 MobiDBLite consensus disorder prediction 35 101 - -
Sebi234g00086 369 SUPERFAMILY SBT domain 151 200 IPR036893 GO:0003677|GO:0005634
Sebi234g00086 369 Gene3D - 149 210 IPR036893 GO:0003677|GO:0005634
Sebi234g00086 369 MobiDBLite consensus disorder prediction 81 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi234g00086 Sebi-Chr234 1046358 1049178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi234g00086 1 335 SBP-box Gene Family AT5G43270 31.830 8.52e-34 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Sebi234g00086 SBP 3.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi234g00086 - - mtr:11441057 334.339