Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi234g00083 ATGAGTTTGTTCCATGTAGTTGGGTTTAGTCTAAAAGTTGGGCATCTTCTTTTGGTGCTATGTTGCTGGGTTGTGTCTGTCGTTTACCTTAACCGGTTCATTAGCAGTGGAATTACAGATACCAAGATAGGTTTTCTGGGTGATGGTGGCAAGATGTGGCTCAAATGGTGGGAGAAGATCTCAGGGCATGGTTACAAAATCCATCAACAGTACTACCAGTATATTTGGTCCAAGAAAGTGAAGAAAGCATTGTGGAGAAAGCTTTTACTGACATGGGTAGTTGGTTGGACTATAGTATCTTTGTGGATCTTCTTCTGCATGAGCTTACAAGCTACTGAGAAGAGGAAAGAAACTCTGGCAAGCATGTGTGATGAAAGGGCTAGGATGCTGCAGGATCAGTTTAATGTGAGTATGAACCATATCCAAGCCATGTCCATTCTGATCTCAACCTTCCACCATGCCAAGAACCCCTCAGCCATCGATCAGAGAACTTTTGCCAGGTACACAGAAAGAACAGCTTTTGAGAGGCCTCTTACAAGTGGTGTTGCATATGCTGTAAGGGTGCTTCATTCTGAAAGGGAACAATTTGAAAAGCAACAAGGCTGGACTATTAAGAGGATGGATACTCTGGAGCAGAACCCAGTTCATAAGGACGATTATGCTCCAGAGGCATTGGAGCCATCCCCCATTCAGGAAGAATATGCTCCTGTCATATTTGCACAGGATACAATTGCACATGTGATTTCTGTTGACATGCTTTCTGGAAAGGTAGGTTTCTGTAGTAAGATTCTTGTGAAATTTTATGTGGAAGCTCTAAAAGTGTCTGCTGAATTGGAAGACCGTGGAAATGTGTTGCGTGCAAGAGAATCAGGCAAAGGGGTTTTAACTGCACCCTTTAGGCTGCTCAAAACAAACAGTCTAGGGGTTATCCTGACATTTGCTGTCTACAAGAGAGATCTTCCATCAAATGCAACCCCAAATGAAAGGATTCAAGCAACTAATGGGTATCTTGGTGGGGTCTTTCATGTTGAGTCATTAGTGGAAAAATTACTTCAGCAACTTGCTAGCAAGCAAACTGTAATTGTCAATGTGTATGATACTACAAATCAAACCCATCCAATTTCCATGTACGGCTCAAATCTATCAGGGGATGTGTTCTATCATGTCAGCACTCTTAACTTTGGAGACCCTTTCAGGAAACATGAGATGCACTGCAGGTTCAAACAGAAACCACCGTGGCCATGGCTGGCAATAACTACTTCAATTGGCATCCTTGTTATTGCACTCCTTGTTGGACATATTTTCCATGCTACTGTGAATCGAATTGCAAAAGTAGAAGATGATTACCGTGAGATGATGGAGCTTAAAAAACGGGCTGAGGCAGCAGATGTTGCAAAATCCCAGTTTCTCGCTACTGTTTCCCATGAGATCAGAACACCAATGAATGGTGTTTTAGGGATGTTGCATATGCTTATGGATACAGATCTAGATGTAACCCAACAGGAATATGTCAGAACGGCACAGGAAAGTGGAAAAGCTCTGGTGTCACTTATAAATGAGGTTTTGGACCAGGCAAAGATTGAATTTGGTAAGCTAGAGCTTGAGGCAGTGCTCTTTGACATACGGGCAATTTTGGATGATGTATTGTCACTATTTTCTGAGAAGTCCCAAGGAAAAGGAGTAGAGTTGGCAGTTTATGTGTCAGATCAGGTTCCTGAATTGCTAATAGGTGATCCAGGAAGGTTTCGACAAATAATTACAAATCTCGTGGGTAACTCAATTAAGTTCACAGACAAAGGGCATATTTTTGTCACTATCCATCTTGTTGAGGAGGTTGTACATTCAATAGAGGTTGACAAAGAAAAAGAATCAAATTCAGATAATACCTTGAGTGGGTTCCCTGTTTCTGATAGTCGCCGGAGCTGGAAAGAATTCAAGGCTTTCAGTCAAGAAGGACCCCTTGGTTCTTTCTCATCCTCCTCCAGTGACCTCATCAATTTGATTGTGTCTGTTGAGGATACAGGAGAAGGTATTCCTCTAGAAGCCCAGCCCCTCATCTTCACTCCATTCATGCAGGTAGGTTCATCCATCTCCAGAAAACATGGGGGAACAGGTATTGGCCTAAGCATTAGCAAGTGTTTGGTTGGCCTCATGAATGGTGAAGTTGGATTTGTAAGCATACCCAAGATTGGATCCACTTTCACTTTTACTGCTGTCTTCACCAATGGACTCCCCAGTTCAAATGAGTGTAAAATTCAGCAAATCAGCAACCAACCTCAACCTGCCTCTTCAGCATTTGAGGGGATGACTGCATTGGTTATTGACCCAAGATCCGTTCGAGCAAAAGTGTCTAGATATCACATCCAACGGCTTGGCATTCATGTTGAAATTGTTTCAGATTTAAACCAAGGTTTGTCAACCATAAGCAATGGGAATATAGTTATCAATATGGTCCTGATTGAGCAGGAGGTCTGGGACAGAGATTCAGGCATGTCATCTCACTTTGTCAATAACACAAGGAAAGTTGACAGTGGGGTTCCTCCACAGCTGTTTATTCTTGTTAATTCTAGTAGTTCTTTCAAAGCAAGTAGCGTAATCCCAGGTGTTAATAATCCTACTGTCATAACAAAACCTCTGAGAGCAAGCATGCTTGCTGCCTCACTGCAAAGAGCCATGGGTTTTACGAACAAGGGCACTTCTTCAAATAGGGACCTCCAAAGCTTGTCTCTTCGCCAACTTCTTCTTGGGAGGAAGATTCTAATTGTAGATGACAATAGTGTGAACCTTGCAGTAGCTGCTGGTGCTTTGAAAAAATATGGAGCAGATGTGGTTTGTGTTAGCAGTGGAAAAGGTGCCATCTCTTCACTGAAGCCACCCCATCAATTTGATGCCTGTTTCATGGATATTCAAATGCCAGAAATGGATGGTTTTGAAGCTACGAAGAGAATTAGAGAGATGGAACATAATGTGAACAGAGAAGTGTCTATGGATGGCTTTGAGAATATTTCAAACTGGCATGTACCCATTTTAGCCATGACTGCAGATGTGATCCAAGCTACACATGAGGAATGCCTAAGGTGTGGCATGGATGGATATGTTTCAAAACCATTTGAAGCTGAACAGCTTTATAGAGAAGTTTCTCGGTTTTTCCAGTCATCTTGA 3162 0.4231 MSLFHVVGFSLKVGHLLLVLCCWVVSVVYLNRFISSGITDTKIGFLGDGGKMWLKWWEKISGHGYKIHQQYYQYIWSKKVKKALWRKLLLTWVVGWTIVSLWIFFCMSLQATEKRKETLASMCDERARMLQDQFNVSMNHIQAMSILISTFHHAKNPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSEREQFEKQQGWTIKRMDTLEQNPVHKDDYAPEALEPSPIQEEYAPVIFAQDTIAHVISVDMLSGKVGFCSKILVKFYVEALKVSAELEDRGNVLRARESGKGVLTAPFRLLKTNSLGVILTFAVYKRDLPSNATPNERIQATNGYLGGVFHVESLVEKLLQQLASKQTVIVNVYDTTNQTHPISMYGSNLSGDVFYHVSTLNFGDPFRKHEMHCRFKQKPPWPWLAITTSIGILVIALLVGHIFHATVNRIAKVEDDYREMMELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTDLDVTQQEYVRTAQESGKALVSLINEVLDQAKIEFGKLELEAVLFDIRAILDDVLSLFSEKSQGKGVELAVYVSDQVPELLIGDPGRFRQIITNLVGNSIKFTDKGHIFVTIHLVEEVVHSIEVDKEKESNSDNTLSGFPVSDSRRSWKEFKAFSQEGPLGSFSSSSSDLINLIVSVEDTGEGIPLEAQPLIFTPFMQVGSSISRKHGGTGIGLSISKCLVGLMNGEVGFVSIPKIGSTFTFTAVFTNGLPSSNECKIQQISNQPQPASSAFEGMTALVIDPRSVRAKVSRYHIQRLGIHVEIVSDLNQGLSTISNGNIVINMVLIEQEVWDRDSGMSSHFVNNTRKVDSGVPPQLFILVNSSSSFKASSVIPGVNNPTVITKPLRASMLAASLQRAMGFTNKGTSSNRDLQSLSLRQLLLGRKILIVDDNSVNLAVAAGALKKYGADVVCVSSGKGAISSLKPPHQFDACFMDIQMPEMDGFEATKRIREMEHNVNREVSMDGFENISNWHVPILAMTADVIQATHEECLRCGMDGYVSKPFEAEQLYREVSRFFQSS 1053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi234g00083 1053 Gene3D CHASE domain 160 411 IPR042240 -
Sebi234g00083 1053 CDD HisKA 465 526 IPR003661 GO:0000155|GO:0007165
Sebi234g00083 1053 CDD REC_hyHK_CKI1_RcsC-like 919 1046 - -
Sebi234g00083 1053 PANTHER TWO-COMPONENT HISTIDINE KINASE 99 1043 - -
Sebi234g00083 1053 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 450 531 IPR036097 GO:0000155|GO:0007165
Sebi234g00083 1053 Coils Coil 442 462 - -
Sebi234g00083 1053 ProSiteProfiles Response regulatory domain profile. 770 892 IPR001789 GO:0000160
Sebi234g00083 1053 Pfam His Kinase A (phospho-acceptor) domain 465 528 IPR003661 GO:0000155|GO:0007165
Sebi234g00083 1053 PRINTS Bacterial sensor protein C-terminal signature 667 681 IPR004358 GO:0016310|GO:0016772
Sebi234g00083 1053 PRINTS Bacterial sensor protein C-terminal signature 702 720 IPR004358 GO:0016310|GO:0016772
Sebi234g00083 1053 PRINTS Bacterial sensor protein C-terminal signature 685 695 IPR004358 GO:0016310|GO:0016772
Sebi234g00083 1053 FunFam Histidine kinase 4 437 528 - -
Sebi234g00083 1053 SMART HisKA_10 465 530 IPR003661 GO:0000155|GO:0007165
Sebi234g00083 1053 SMART REC_2 917 1046 IPR001789 GO:0000160
Sebi234g00083 1053 CDD HATPase_EvgS-ArcB-TorS-like 582 740 - -
Sebi234g00083 1053 ProSiteProfiles Histidine kinase domain profile. 472 742 IPR005467 -
Sebi234g00083 1053 SMART CHASE_2 156 379 IPR006189 -
Sebi234g00083 1053 Pfam Response regulator receiver domain 919 1045 IPR001789 GO:0000160
Sebi234g00083 1053 ProSiteProfiles Response regulatory domain profile. 918 1050 IPR001789 GO:0000160
Sebi234g00083 1053 Gene3D - 529 742 IPR036890 -
Sebi234g00083 1053 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 577 740 IPR003594 -
Sebi234g00083 1053 ProSiteProfiles CHASE domain profile. 156 404 IPR006189 -
Sebi234g00083 1053 SUPERFAMILY CheY-like 916 1050 IPR011006 -
Sebi234g00083 1053 SMART HKATPase_4 577 742 IPR003594 -
Sebi234g00083 1053 Gene3D - 107 159 - -
Sebi234g00083 1053 CDD PRTases_typeI 868 946 IPR000836 -
Sebi234g00083 1053 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 519 737 IPR036890 -
Sebi234g00083 1053 Gene3D - 433 528 - -
Sebi234g00083 1053 FunFam Histidine kinase 4 257 411 - -
Sebi234g00083 1053 Gene3D - 914 1053 - -
Sebi234g00083 1053 Pfam CHASE domain 159 256 IPR006189 -
Sebi234g00083 1053 Pfam CHASE domain 276 377 IPR006189 -
Sebi234g00083 1053 SUPERFAMILY CheY-like 766 894 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi234g00083 Sebi-Chr234 988677 994092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi234g00083 1 1052 Miscellaneous Gene Families AT1G27320 67.102 0.0 1406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Sebi234g00083 HATPase_c 3.5e-29 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi234g00083 K14489 - gmx:100801546 1775.37