Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi234g00081 ATGACACCTGGTCAAGAATATGATATTAATGATCTGTTTCAAGAGGCTCAAAGGAGATGGCTGAAGCCTGCAGAAGTGATAGATGGTCATACCTGGCGGAAGAAAAGAGATGGAAGAGCTGTGGGAGAAGCACATGAACGGCTGAAGGTTGGAAACGTTGAAGCCTTAAATTGTTACTATGCACACGGAGAACATAACCCTACTTTCCAGAGACGGAGCTATTGGATGTTGGATCCGGCGTATGAGCATATTGTTCTTGTGCATTACAGAGAAACAAGTGAGGGAAAGCCCAGTCCTGGACCTGGCGCACAATTGTCACCAAACTCGTCTTCTGCGTTTAGCCCGAGTCCTAGCTCCTATTCTACTCAGAACCCAGGGTCAACATCCATTCTTGATGATTCATATGAACCTAATCAGAGTTTCTCCAGTCCTGGATCTGCGGAAGTTAGCTCTGATATATTCATTGTGAACAATGGAATGGGTCACTTGGATGGAACAGATGCAGAATCAGGAACCTCAGCTGAACTTGAGATTACTCAAGCGCTGCGCCGATTGGAGGAGCAGTTAAGTTTGAATGAGGAGAACTTTGAAGAAATTGCTCCTTTCTACAATGAACACGAAACTGCACGTGATTCAAACCCTCAGCACCATCAAGGGGTGATCGGCAAACAAGAGAAATCTGCAGCTTTCTCTGGACCAGATGATCAAGGGCTATTTTACAATGGATATAATGGAAGGCAAGGTGATGGTGGTAAACATTATCGTGAATTACTAGACCATGGTTGTCCTGATGGAAATGAAAAGGCTTTATCTTGGACAGACGTGATGGAATCATGTAAGCCCTCATCTGCAGCCAAGGTACCCCAGAAAAATGTATACATGCCAGCTGGAAATGAAAATTCACCATCCTCTTCAAGAAGGGAGCCGGTTGTAAACCAGGAAAACTGCTGCTGGCTAAACTTCAATAATAATAATAATGCTGGAAACTCTGTTTTCTCGCTACCTCAATGCGTTGGTGGAGTCAAACATCCTCCATATTCTTCTATAGTAGAAACACAAGAAATTGGTTCTGACTACTATGCAACATTGTTTGACCAAAGCCAGATTGGAGCACCGCTGGATGCAGGTTCAAGCTTAACTGTAGCACAAAAACAGAAATTTACTATTAAGGCAGTCTCTCCAGAATGGGGTTATGCCTCTGAGACTACAAAGGTCTTCATTATTGGGTCTTTTCTCTGTCATCCCTCGGATTCTACCTGGGCCTGTATGCTTGGTGATGTTGAAGTTCCTGTTGAGATAATTCAGGATGGTGTAATTTGTTGTGAAGCTCCATCTCACCTTCCTGGAAAGGTTACTCTGTGCATTACTTCTGGAAACCGGGAGTCCTGCAGTGAAGTCAGAGAGTTTGAGTATCGCAACAAGGCCACTAGTTTCACCCGCAGTACTCCGTTGGAAACAGAAACCGCAAGAAGTCCAGATGAGCTCTTATTACTTGTTAGATTTGGCCAGATGCTCCTTTCTCCATCAACTATAAAGAATGACAACATTGAATCTGGAGTTCCTCTCATAAAACAGAAAGCTGATGATGATTCATGGAGCCATATTATAGAGGCTCTTCTAGTTGGCAGTGGAACTTCATCTAGTACTATAGATTGGCTTCTTGAAGAGCTTCTAAAGGATAAGCTGCAAATGTGGCTTTCTTGCAAATCCCAGCAAGTAGATGAAGAGACAGGCTGTTCTTTGTCCAAGAAGGAGCAGGGGATTATTCACATGGTTGCTGGATTGGGTTTTGAGTGGGCCTTGAACCCTATTCTCAGTTGTGGTGTGAATATCAATTTCCGTGACATCAATGGGTGGACTGCCCTTCATTGGGCTGCACGTTTTGGAAGGGAAAAAATGGTTGCTTTGCTTATAGCTTCTGGTGCATCTGCTGGAGCTGTGACAGATCCAAGTGCACAAGATCCAATTGGTAAAACTGCTGCATCGATTGCAGCCAGCAATGGGCATAGGGGACTAGCAGGTTATCTTTCAGAGGTAGCTCTAACAAGTCATCTGTCTTCGCTTACCCTGGAAGAGAGTGAGCTATCAAAAAGTTCAGCTGAGTTTCAGGCAGATTTAACTGTTAGTAATGTCTCCAATGAAAATATTTCTGCCAGTGCGGATCAGGCTTCACTCAAAGATACCTTGGCTGCTGTTAGAAATGCAACTCAGGCAGCTGCACGGATACAGGCTGCTTTTCGATCACACTCCTTTAGAAAACGGAGAGCAAGAGAAGCAGTTTCTTCTGGTATAGACGGATATGGTATCAGTGCAGGTAGCATTGGTAACATTCCAGAGCTTTCTGCTATGTCAAAACTTGCCTTTCGGAACTCACGTGAGCATAATTCAGCTGCCTTATCAATTCAGAAGAAATATCGAGGTTGGAAAGGTCGCAAAGATTTCTTAGCATTGCGCCAAAAAGTAGTGAAGATACAGGCTCATGTGAGGGGTTACCAGGTTAGGAAGCATTACAAGGTATTATGGGCGGTTGGAATCTTGGACAAGGTTGTGCTGCGGTGGCGGAGAAAAGGAGCTGGTTTACGAGGCTTCCGACAGGAGATGGAGATTAATGAAAATGAAGATGAAGATATTCTCAAGATCTTCAGAAAACAGAAAGTTGATGTAGAAATTGAGGAGGCTGTTTCACGGGTGCTATCCATGGTCGACTCTCCAGATGCTCGTCAGCAATATCATCGCATGCTTGAGAAGTTTCGTCAAGCCAAGGCTGAACTTGCGGGGACGAGTGAAGAAACATCATTATCAACCTCTGTAGGGGATACTTTCAAAATGGAATCTCTAGGGAATACTTTCAATATGGAAGATGATTTTTATCAATTTCCCTAG 2883 0.4395 MTPGQEYDINDLFQEAQRRWLKPAEVIDGHTWRKKRDGRAVGEAHERLKVGNVEALNCYYAHGEHNPTFQRRSYWMLDPAYEHIVLVHYRETSEGKPSPGPGAQLSPNSSSAFSPSPSSYSTQNPGSTSILDDSYEPNQSFSSPGSAEVSSDIFIVNNGMGHLDGTDAESGTSAELEITQALRRLEEQLSLNEENFEEIAPFYNEHETARDSNPQHHQGVIGKQEKSAAFSGPDDQGLFYNGYNGRQGDGGKHYRELLDHGCPDGNEKALSWTDVMESCKPSSAAKVPQKNVYMPAGNENSPSSSRREPVVNQENCCWLNFNNNNNAGNSVFSLPQCVGGVKHPPYSSIVETQEIGSDYYATLFDQSQIGAPLDAGSSLTVAQKQKFTIKAVSPEWGYASETTKVFIIGSFLCHPSDSTWACMLGDVEVPVEIIQDGVICCEAPSHLPGKVTLCITSGNRESCSEVREFEYRNKATSFTRSTPLETETARSPDELLLLVRFGQMLLSPSTIKNDNIESGVPLIKQKADDDSWSHIIEALLVGSGTSSSTIDWLLEELLKDKLQMWLSCKSQQVDEETGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVNINFRDINGWTALHWAARFGREKMVALLIASGASAGAVTDPSAQDPIGKTAASIAASNGHRGLAGYLSEVALTSHLSSLTLEESELSKSSAEFQADLTVSNVSNENISASADQASLKDTLAAVRNATQAAARIQAAFRSHSFRKRRAREAVSSGIDGYGISAGSIGNIPELSAMSKLAFRNSREHNSAALSIQKKYRGWKGRKDFLALRQKVVKIQAHVRGYQVRKHYKVLWAVGILDKVVLRWRRKGAGLRGFRQEMEINENEDEDILKIFRKQKVDVEIEEAVSRVLSMVDSPDARQQYHRMLEKFRQAKAELAGTSEETSLSTSVGDTFKMESLGNTFNMEDDFYQFP 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi234g00081 960 SMART iq_5 816 838 IPR000048 GO:0005515
Sebi234g00081 960 SMART iq_5 793 815 IPR000048 GO:0005515
Sebi234g00081 960 SMART iq_5 734 756 IPR000048 GO:0005515
Sebi234g00081 960 SMART ANK_2a 617 646 IPR002110 GO:0005515
Sebi234g00081 960 SMART ANK_2a 656 685 IPR002110 GO:0005515
Sebi234g00081 960 FunFam Calmodulin-binding transcription activator 4 isoform A 499 682 - -
Sebi234g00081 960 Gene3D - 512 682 IPR036770 -
Sebi234g00081 960 Pfam Ankyrin repeats (3 copies) 599 677 IPR002110 GO:0005515
Sebi234g00081 960 CDD IPT 388 472 - -
Sebi234g00081 960 ProSiteProfiles IQ motif profile. 817 842 IPR000048 GO:0005515
Sebi234g00081 960 SUPERFAMILY Ankyrin repeat 586 678 IPR036770 -
Sebi234g00081 960 ProSiteProfiles Ankyrin repeat profile. 617 649 IPR002110 GO:0005515
Sebi234g00081 960 ProSiteProfiles CG-1 DNA-binding domain profile. 1 98 IPR005559 GO:0003677
Sebi234g00081 960 MobiDBLite consensus disorder prediction 92 147 - -
Sebi234g00081 960 ProSiteProfiles Ankyrin repeat region circular profile. 617 643 - -
Sebi234g00081 960 Pfam CG-1 domain 28 91 IPR005559 GO:0003677
Sebi234g00081 960 FunFam Calmodulin-binding transcription activator 2 382 476 - -
Sebi234g00081 960 FunFam Calmodulin-binding transcription activator 2 793 841 - -
Sebi234g00081 960 SMART CG_1_2 12 93 IPR005559 GO:0003677
Sebi234g00081 960 SUPERFAMILY E set domains 388 472 IPR014756 -
Sebi234g00081 960 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 28 923 - -
Sebi234g00081 960 ProSiteProfiles IQ motif profile. 794 823 IPR000048 GO:0005515
Sebi234g00081 960 MobiDBLite consensus disorder prediction 102 147 - -
Sebi234g00081 960 Pfam IPT/TIG domain 388 471 IPR002909 -
Sebi234g00081 960 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 784 841 IPR027417 -
Sebi234g00081 960 MobiDBLite consensus disorder prediction 208 244 - -
Sebi234g00081 960 Gene3D - 793 842 - -
Sebi234g00081 960 Gene3D Immunoglobulins 382 477 IPR013783 -
Sebi234g00081 960 ProSiteProfiles IQ motif profile. 735 763 IPR000048 GO:0005515
Sebi234g00081 960 Pfam IQ calmodulin-binding motif 796 814 IPR000048 GO:0005515
Sebi234g00081 960 Pfam IQ calmodulin-binding motif 819 838 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi234g00081 Sebi-Chr234 974693 983953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi234g00081 6 927 CAMTA Transcription Factor Family AT1G67310 51.202 0.0 865
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Sebi234g00081 Ank_2 2e-08 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi234g00081 K21596 - gmx:100786880 1460.66