Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi234g00079 ATGGGAGATCACAATCACAAAGTGGGAGCACAACAATACCTGCAAGATGGAAAGGAAGCACAACCCAACAATGTTCTTGAACGACGTGTTCGAGAGCCAGTTGGAGACAATATGGGAAGTTGGAAATGGGATGTCATCGCTAAGGGGGACATAACAACAGAGCAGAAGAGAGATAATTGGAGAGAGGAAAGGAGAGAAATCAGAATAGGAAAGAAGGAAGCTAGGGTTTTCAGAATGGGGAAGAAGAAGGTGGAGATGAAGCGAATCGAGAACAAAAGCAGTCGCCAGGTAACTTTCTCAAAGCGGCGCAAGGGATTGTTGAAGAAAGCTCGCGAGTTGGCCATTCTCTGCGATGCGAACGTGGCGGTGGTCATCTTCTCCAGCGCCGGGAAGCTCTACGAGTGCTGCAACGGTGACAGTTTAAGCAAGGTCCTCCAGCGATACTGGGATCATTTAGGAGCAAGCAGTACTGACTCAAAGCCGGATATATGCTTTGATGTTGCAGATATCTGGTCTGGTGCAGCATTTTCTCAATTGGTCAAAAGGTACTTTGGTGTTTCTGAACTTGAGCATCTGAGTGTGACTGACCTTATGGAACTAGAGAAACTGATTCATACTGTGCTTTCGCAAATCGCATCAGCAAAGATGCGGTTGATGATGGAGTCAGTAATGGACCTTAAGCAAAAGGAAAGGTTTGAAAATCCGGTGCTATGCACGACACCTCAAAATGTACATGAAATACCCGAAAGTATGAACATATTAAAGTCAGTTCTTCACCTGCTGCAGATTGCGGCATTGCAAAATGGTGAAGACATCAACAAGGTGGTGACACAGACCAAGGAGTGTGATACAAGCAGAGTTGGAAGGTGCGACTAA 876 0.4589 MGDHNHKVGAQQYLQDGKEAQPNNVLERRVREPVGDNMGSWKWDVIAKGDITTEQKRDNWREERREIRIGKKEARVFRMGKKKVEMKRIENKSSRQVTFSKRRKGLLKKARELAILCDANVAVVIFSSAGKLYECCNGDSLSKVLQRYWDHLGASSTDSKPDICFDVADIWSGAAFSQLVKRYFGVSELEHLSVTDLMELEKLIHTVLSQIASAKMRLMMESVMDLKQKERFENPVLCTTPQNVHEIPESMNILKSVLHLLQIAALQNGEDINKVVTQTKECDTSRVGRCD 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi234g00079 291 SUPERFAMILY SRF-like 79 161 IPR036879 GO:0003677|GO:0046983
Sebi234g00079 291 PANTHER SERUM RESPONSE FACTOR HOMOLOG 79 230 - -
Sebi234g00079 291 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 88 134 IPR002100 GO:0003677|GO:0046983
Sebi234g00079 291 ProSiteProfiles MADS-box domain profile. 79 139 IPR002100 GO:0003677|GO:0046983
Sebi234g00079 291 Gene3D - 91 160 IPR036879 GO:0003677|GO:0046983
Sebi234g00079 291 CDD MADS_MEF2_like 80 157 IPR033896 GO:0000977|GO:0045944
Sebi234g00079 291 PRINTS MADS domain signature 81 101 IPR002100 GO:0003677|GO:0046983
Sebi234g00079 291 PRINTS MADS domain signature 116 137 IPR002100 GO:0003677|GO:0046983
Sebi234g00079 291 PRINTS MADS domain signature 101 116 IPR002100 GO:0003677|GO:0046983
Sebi234g00079 291 SMART madsneu2 79 138 IPR002100 GO:0003677|GO:0046983
Sebi234g00079 291 Pfam K-box region 178 231 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sebi234g00079 291 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi234g00079 Sebi-Chr234 930331 946663 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi234g00079 79 262 MADS-box Gene Family AT5G65060 40.212 3.65e-37 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Sebi234g00079 K-box 5.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi234g00079 - K09264 gmx:100778392 244.973