Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi234g00063 ATGGATGAAGATTTCGAGTTCCCAACTGCTGGCGACATGGAAATGCCAGAGGAGGAGGAAGATATGGTGAGTCCGACCCTCAAGGTTGGGGAGGAAAAGGAGATTGGGAAGAACGGGCTTAAGAAGAAGCTGATCAAGGAAGGTGAAGGGTGGGAGACTCCTAACACTGGAGACCAAGTTGAAGTTCATTATACCGGAACATTGCTGGATGGAACCCAATTTGATTCTAGCCGTGACAGGGGTACCCCTTTCAAATTCAAGCTTGGCCAAGGGCAAGTGATTAAGGGATGGGATGAAGGTATCAAAACCATGAAGAAGGGTGAAAATGCAATTTTCACAATACCCCCAGAATTGGCTTATGGAGAGTCTGGGTCTCCTCCCACTATTCCCCCAAATGCAACTCTTCAGTTTGATGTGGAGTTGCTGTCTTGGACAAGTGTGAAGGATATTTGCAAGGATGGAGGAATATTGAAGAGCATAGTTACTGAAGGGGAGAAATGGGATAATCCTAAGGACTTGGATGAAGTGCTTGTTAAGTATGAAGCACGGCTTGAAGATGGAACAGTCATTTCAAAATCTGATGGGGTGGAATTCACTGTGGAAGAAGGGTATTTCTGTCCTGCTTTGGCCAAGGCTGTGAAAACAATGAAGAAGGGAGAGAAAGTTCTCTTGAATGTGAAGCCACAATATGCATTTGGTGAGAGTGGAAGGCCAGCATCAGGAGATGAAGGTGCTGTACCTCCAAATGCTTCACTCCAAATAGACCTTGAGTTAGTCTCATGGAAAACCGTATCTGACATTACCAAGGATAGGAAGGTTCTGAAGAAGACCTTGAAGGAAGGAGAAGGATATGAACGACCAAACGATGGAGCTGTGGTTCAAGTGAAACTTATTGGGAAGCTGCAAGATGGGACTGTTTTCCTTAAGAAAGGCTACGATGATGATGAACAGCCGTTTGAGTTCAAAATTGATGAAGAGCAAGTAATTGATGGACTTGATAGAGCTGTGAAGAACATGAAGAAAGGAGAAATTGCATTGGTGACCATACAGCCTGAATATGCTTTTGGTCCATCTGGGTCCCCTCAGGAATTGGCTACTGTCCCTCCAAATTCCACTGTGTACTATGAAGTTGAGCTGCTTTCCTTTGTAAAGGAAAAAGAATCATGGGATCTGAATACACAAGAGAAGATTGAGGCAGCTGGAAAGAAAAAGGAAGAAGGGAATGCATTGTTCAAGGCTGGTAAATATGAAAGAGCATCAAAGAGATATGAAAAGGCCATAAGGTTTATTGAGTATGATTCCTCCTTCAGTGATGAGGAGAAACAACAGACTAAGGCATTGAAAATCACATGCAACCTCAATAACGCAGCCTGCAAGCTGAAACTCAAGGACTACAAACAGGCAGAGAAGATGTGCACAAAGGTGTTAGAGCTTGATAGTAGGAATGTAAAAGCACTTTACCGGAGGGCTCAAGCATATATGAATCTTGTGGACTTGGATCTGGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAGACAATAGGGATGTGAAGATTGAGTACAAAATTTTGAAGGAGAAAGTTAGAGAATACAACAAGAAGGACGCACAGTTTTATGGCAGCATATTTGCAAAGATGAACAAACTAGAACAAGCAAGAACTGCAGCAGCAAAGCAGGAACCTGTGCCAATGACTATTGATAGCAAAGCTTAA 1719 0.4322 MDEDFEFPTAGDMEMPEEEEDMVSPTLKVGEEKEIGKNGLKKKLIKEGEGWETPNTGDQVEVHYTGTLLDGTQFDSSRDRGTPFKFKLGQGQVIKGWDEGIKTMKKGENAIFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGILKSIVTEGEKWDNPKDLDEVLVKYEARLEDGTVISKSDGVEFTVEEGYFCPALAKAVKTMKKGEKVLLNVKPQYAFGESGRPASGDEGAVPPNASLQIDLELVSWKTVSDITKDRKVLKKTLKEGEGYERPNDGAVVQVKLIGKLQDGTVFLKKGYDDDEQPFEFKIDEEQVIDGLDRAVKNMKKGEIALVTIQPEYAFGPSGSPQELATVPPNSTVYYEVELLSFVKEKESWDLNTQEKIEAAGKKKEEGNALFKAGKYERASKRYEKAIRFIEYDSSFSDEEKQQTKALKITCNLNNAACKLKLKDYKQAEKMCTKVLELDSRNVKALYRRAQAYMNLVDLDLAEMDIKKALEIEPDNRDVKIEYKILKEKVREYNKKDAQFYGSIFAKMNKLEQARTAAAKQEPVPMTIDSKA 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi234g00063 572 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 52 142 IPR001179 GO:0003755
Sebi234g00063 572 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 170 259 IPR001179 GO:0003755
Sebi234g00063 572 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 284 380 IPR001179 GO:0003755
Sebi234g00063 572 SUPERFAMILY FKBP-like 264 400 - -
Sebi234g00063 572 FunFam Peptidylprolyl isomerase 30 148 - -
Sebi234g00063 572 MobiDBLite consensus disorder prediction 1 20 - -
Sebi234g00063 572 SUPERFAMILY TPR-like 389 549 IPR011990 GO:0005515
Sebi234g00063 572 FunFam Peptidylprolyl isomerase 263 385 - -
Sebi234g00063 572 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 57 145 IPR001179 GO:0003755
Sebi234g00063 572 SMART tpr_5 449 482 IPR019734 GO:0005515
Sebi234g00063 572 SMART tpr_5 400 433 IPR019734 GO:0005515
Sebi234g00063 572 SMART tpr_5 483 516 IPR019734 GO:0005515
Sebi234g00063 572 Pfam Tetratricopeptide repeat 484 516 IPR019734 GO:0005515
Sebi234g00063 572 SUPERFAMILY FKBP-like 149 265 - -
Sebi234g00063 572 Gene3D - 32 148 IPR046357 GO:0003755
Sebi234g00063 572 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 153 265 - -
Sebi234g00063 572 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 173 262 IPR001179 GO:0003755
Sebi234g00063 572 MobiDBLite consensus disorder prediction 1 26 - -
Sebi234g00063 572 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 290 383 IPR001179 GO:0003755
Sebi234g00063 572 SUPERFAMILY FKBP-like 31 150 - -
Sebi234g00063 572 FunFam Peptidylprolyl isomerase 149 262 - -
Sebi234g00063 572 Gene3D Tetratricopeptide repeat domain 386 543 IPR011990 GO:0005515
Sebi234g00063 572 ProSiteProfiles TPR repeat profile. 483 516 IPR019734 GO:0005515
Sebi234g00063 572 Gene3D - 149 262 IPR046357 GO:0003755
Sebi234g00063 572 Coils Coil 516 536 - -
Sebi234g00063 572 Gene3D - 263 385 IPR046357 GO:0003755
Sebi234g00063 572 FunFam Peptidylprolyl isomerase 388 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi234g00063 Sebi-Chr234 720750 723835 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi234g00063 15 572 Calmodulin-binding Proteins AT5G48570 75.000 0.0 870
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi234g00063 K09571 - gmx:100810243 1022.31