Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi234g00029 ATGCGTTGTTATGGCTTAACCATCCCTGGAACTGGAACCGATCATCGCTTCTGCGTTCCTACAGTAACTCCGGTATCACTCAGGCCCACCACCAGGCCCATGGCCCGAATAACAATCGGGTTAGGGTTTCCGAAGGCGAAGGCCACTCTCAACGACGGTTTCGTGGCCGAGGAAGCTTCATCGGAACTGAGCTTTTACCAGCTTCTGGGCATACCCGAATCAGGTTCCTTGATGGATATCAAACAAGCCTACAAACAACTCGCCCGAAAGTACCACCCGGATGTTTCTCCACCGGGTCGGGTCGATGAGTACACGAAGAGGTTCATTCAGGTTCAAGAGGCTTATGAGACTTTATCTGATCCCTCCAGAAGAGCCATGTATGATAGAGACATGGCTAGAGGCATTCACTTCGCCTTCAACGCTCGTAGACGTGACCAATACCATGATCAGGTGGTTGAACAGAAAAGTGAATGGAAATCTCGTTGGCAATCTCAACTGTCTGAGCTGAAGAGAAGAAGTAAAAGCAAGGAAGCTGGAGGGAACATGTCATGGGCAGCTCGAATGCGCCAACAGAGAGATGAACTATGA 588 0.5 MRCYGLTIPGTGTDHRFCVPTVTPVSLRPTTRPMARITIGLGFPKAKATLNDGFVAEEASSELSFYQLLGIPESGSLMDIKQAYKQLARKYHPDVSPPGRVDEYTKRFIQVQEAYETLSDPSRRAMYDRDMARGIHFAFNARRRDQYHDQVVEQKSEWKSRWQSQLSELKRRSKSKEAGGNMSWAARMRQQRDEL 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi234g00029 195 ProSiteProfiles dnaJ domain profile. 64 131 IPR001623 -
Sebi234g00029 195 Pfam DnaJ domain 65 128 IPR001623 -
Sebi234g00029 195 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 56 194 - -
Sebi234g00029 195 FunFam Chaperone protein dnaJ 20, chloroplastic 48 160 - -
Sebi234g00029 195 CDD DnaJ 65 120 IPR001623 -
Sebi234g00029 195 MobiDBLite consensus disorder prediction 166 195 - -
Sebi234g00029 195 SMART dnaj_3 63 123 IPR001623 -
Sebi234g00029 195 SUPERFAMILY Chaperone J-domain 61 141 IPR036869 -
Sebi234g00029 195 ProSitePatterns Nt-dnaJ domain signature. 108 127 IPR018253 -
Sebi234g00029 195 Gene3D DnaJ domain 51 169 IPR036869 -
Sebi234g00029 195 PRINTS DnaJ domain signature 103 123 IPR001623 -
Sebi234g00029 195 PRINTS DnaJ domain signature 84 99 IPR001623 -
Sebi234g00029 195 PRINTS DnaJ domain signature 66 84 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi234g00029 Sebi-Chr234 353190 355544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi234g00029 66 128 C2H2 Transcription Factor Family AT1G74250 40.909 3.51e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi234g00029 - - gmx:100101903 288.5