Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi232g00046 ATGACTCTTGCATCCACTGAAGCAGCTAATAGTCCTTTTCAGACACCTATATCAGGAAAGACAAGGAAATCAAGCAAAGCCTCTAGACTTACAAAATGCAACAGATTTGAACCAAAAACCCCAGGCTCAAACATAGGTTCTTCTTCAGGCAATAATCTCACTCCTGCTGGTCCATGTCGTTATGACAGCTCGTTAGGTCTGTTGACAAAGAAGTTCATCAATTTGATCAAACAAGCGGAGGATGGTATTCTTGATTTGAATAAAGCTGCTGACACATTAGAGGTACAAAAGAGGAGAATATATGATATAACGAATGTTCTTGAAGGGATTGGCCTTATAGAAAAGAAGCTTAAAAACAGAATTCAATGGAAGGGCCTGGATGTTTCAAGACCAGGGGAGGCTGATGTTAGTTTTGCCAGTTTACAGGCTGAAGTTGAAAATCTTACAATAGAGGAGCACCGTTTAGATGAACAAACAAGGGAGGTTCAAGAAAGACTAAGGGATCTTAGTGAAGATGAAAATAATCAGAAATATCTTTTTGTTACTGAGGAAGATATAAAGAGCTTGCCCTGCTTCAAGGATGAAACCCTGATAGCAATTAAAGCTCCACATTGCACCACTTTGGAGGTCCCTGATCCTGATGAGGCTGTTGATTATCCCCAGAGGAGATACAGGATTGTCCTGAGAAGCACAATGGGCCCAATAGATGTATACCTTATTAGTCAATTTGAAGAAAAGTTTGAGGAGATTAATGGTGTTGATGAGGCACCCAATGTTTCATCCAGTCCAGAGTTTAACAAACATCAATCAATAGTGGCATCAGAGGATAGAGGGAAGGACCTAGATATACAGGAACAAGATGTTCATGAGCCTAGTTCAGATTTTCCTACTTCACAGGACTCTGTGAGTGGGATCTTGAAGATTGTTCCTTCAGATTTTGATAGTGGTGCTGATTACTGGCTTTTATCTGATGCTGATGTTAGCATAACGGATATGTGGAGAACAGAACCCAGTGTTGAATGGAATAATCTGTATACAGTTCAAGAAGACCATTGTATGACTCACGTGAGCCCACCACCACCACCCCAAACTCCTCTTTCCAACGTAAGTGAAGTGCCGGCTTCTAACCCTACTGGACTGGAGGTTGATGTGTAA 1155 0.4121 MTLASTEAANSPFQTPISGKTRKSSKASRLTKCNRFEPKTPGSNIGSSSGNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADVSFASLQAEVENLTIEEHRLDEQTREVQERLRDLSEDENNQKYLFVTEEDIKSLPCFKDETLIAIKAPHCTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLISQFEEKFEEINGVDEAPNVSSSPEFNKHQSIVASEDRGKDLDIQEQDVHEPSSDFPTSQDSVSGILKIVPSDFDSGADYWLLSDADVSITDMWRTEPSVEWNNLYTVQEDHCMTHVSPPPPPQTPLSNVSEVPASNPTGLEVDV 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi232g00046 384 Pfam E2F transcription factor CC-MB domain 141 241 IPR032198 GO:0046983
Sebi232g00046 384 Pfam E2F/DP family winged-helix DNA-binding domain 62 125 IPR003316 GO:0005667|GO:0006355
Sebi232g00046 384 SUPERFAMILY "Winged helix" DNA-binding domain 60 123 IPR036390 -
Sebi232g00046 384 MobiDBLite consensus disorder prediction 1 54 - -
Sebi232g00046 384 Gene3D - 54 127 IPR036388 -
Sebi232g00046 384 SMART E2F_TDP_2 60 125 IPR003316 GO:0005667|GO:0006355
Sebi232g00046 384 Coils Coil 76 96 - -
Sebi232g00046 384 Gene3D - 134 242 - -
Sebi232g00046 384 MobiDBLite consensus disorder prediction 1 24 - -
Sebi232g00046 384 CDD E2F_DD 140 242 IPR032198 GO:0046983
Sebi232g00046 384 MobiDBLite consensus disorder prediction 356 384 - -
Sebi232g00046 384 FunFam E2F transcription factor 1 54 127 - -
Sebi232g00046 384 Coils Coil 138 175 - -
Sebi232g00046 384 SUPERFAMILY E2F-DP heterodimerization region 140 242 IPR037241 -
Sebi232g00046 384 MobiDBLite consensus disorder prediction 37 54 - -
Sebi232g00046 384 PANTHER TRANSCRIPTION FACTOR E2F 8 339 IPR015633 GO:0000978|GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi232g00046 Sebi-Chr232 1312842 1315852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi232g00046 13 352 E2F-DP Transcription Factor Family AT5G22220 61.838 1.13e-141 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Sebi232g00046 E2F_CC-MB 1.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi232g00046 K06620 - gmx:100819817 578.941