Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi232g00039 ATGGGGTCTCGAATGGATCAATACGAGATCATGGAGCAGATCGGTCGCGGAGCGTTTGGTGCTGCTATTCTCGTTAACCACAAGGCGGAGAAGAAGAAATACGTTTTGAAAAAAATCAGGCTTGCGCGGCAAACTGAACGCTGCAGAAGATCTGCTCATCAAGAGATGGCTCTTATTGCTAGAATTCAGCACCCTTACATTGTGGAATTCAAGGAGGCGTGGGTTGAGAAGGGTTGCTATGTCTGCATTGTAACTGGATACTGTGAAGGTGGAGACATGGCTGCGTTGATGAAAAAATCAAATGGGGTCTACTTTCCCGAGGAGAAACTCTGCAAGTGGTTCACTCAAATACTGTTGGCAGTAGAATACCTGCATTCAAATTTTGTTTTACACCGTGACCTAAAGTGTTCTAACATCTTTCTCACCAAGGATCAGGATGTTCGCCTAGGGGATTTTGGACTTGCTAAGACACTAAAAGCAGATGATTTGGCTTCTTCGGTGGTAGGAACTCCCAATTACATGTGTCCTGAACTGCTTGCAGATATTCCTTATGGATTCAAATCTGATATTTGGTCACTAGGGTGCTGTATATATGAGATGGCTGCTCATCGCCCTGCTTTTAAAGCTTTTTCGGTTATGCTTTATGTCATTTTCTACACTATGGATATGGCTGGACTGATAAGCAAAATAAATCGTTCCTCTATTGGTCCTTTGCCTCCCTGTTATTCCCCATCCTTGAAAACACTGATAAAGGGCATGCTGAGAAAAAATCCTGAGCATCGTCCAACAGCATCTGAAATCCTAAAGCACCCTTATTTGCAGCCTTATGTTCATCAATATTGTTCATCTTTCTGTCCTCCAGCAGCCTGTTCTCCTGAAAAGCCAATTTCAGCTGTCCATGATCCTCAAAAAAATATGGCAGAAAGTCAAAACAGTAGTAGTTCGAGTAGTGACAAAGGTAGTTCGATGTCAAGTGAGAGACACATTGCAAAAGTAGTGCCAAAGTGTGGTAACAAAATCACTGAGATAGACCTGCCTAGTGTAGATGGAAATAGCTCCAGTAATGTTAGCACAAAAACAGATGAGCAGGAGGTTATGAAGCAAACTCACAATGAACACCATTCTAATGTTGTATCTAAGCAACCAAAAACAATTAAGAATGTAATGATGGCATTAAGAGATGAAAAAGTTAGAGAGACAAGTTCTCCAATGAGAGGCAATCGCATAAAGGCTGGTGGTGTATCAACACAGAAAATAAATACAGAGACATCATCCAAACTGCCAAAACCTAATCCTTGTGTTTCTGGTTTGAAGCCTAATTTAGAGGTGCCAACTATTGCGCCTTCAAAAGCAACCCCTGATTCTGCAAAACAAATGCAGGGATCACATACTTTAAAGCATCAGTTACCGATGATAGAATCCACACCAAAAACTAAACCTCGACACAATGTGATTTTAGCATCTGGTCCTATCAAACAAGTAGGTGGAGGTGGAGCTCCTGCCAAGCCAAAGCAAAAGACTCCTCCAAGCTTACTTAAACCACCTTCGTTTCCAAGACGTATGAGGCAGGCAGGGCTTGATGTTCCAAATGCAGAAAATGATACAGTAAAGTTAAGTCCAAATAAAATTGCCCAGGAGCCTAAGATGAGCCACCATCAGTTGACCAATGGTCATCTAACACATGTTTCTAGAGAGATTGCTAGAGAGCCTTTGAAGGCTTTTGAAAGTAGTTCCAAAGGAATTCAAACAGACAGCAGCAATTCTATCTCATCTTCAGTCTCTATTCAAGGATTCGAACTTTCTGACTTTGCAACCACTTTTATTGACTTGAGTGATCCAATACTTCCTGATCATGAGAGTTTAAACCATACTGAAAATGTGGAATCGCGTCCAGACAGCAGTTCTGAAAAATTGTCCGGGGAAACCTCTCTTGTTACACCAAATTTTCAGAATACAATTACTAGTAATGAGAAAGCAAGTCCTGGTTTAACTCTGGATCACTTAGTTCAGGATTCTAAGGTAATGTTTGCTTCTGATGATAGTTCTCTCACAAATCAAACAACTACATCTGTTGCCTCTGGGTGTGATAATATATCTGTAGATCCCTCTTCCGTAATCACACAAGAAATCAAAAACCTTCAAGATATTTCTAAGGAAATGACTTCAACCAAGTCTCTCAAACATCCTCTCCCCATTTCTGGAGAAAAATCTGTTTGTGAAGTGAATCCAGTAAGCCAGTCAAATAATAGGCCTGAAAAAGTTAGCCAGCCAAAACATATATGCATCTCCCCTGGTGATGACAAATTCATGGTAAGGGAAAGACCTGCCGCTGAAACTGCCCCTCTGATTATCTCTACAAAAATTTCAAGCCAGAAAGTTCTACAAGAAGAGAGAGGAACAGTTTTACAGAATCCAGCACCAGAAAGGCCAGCTTCTGGTCACCTTCCTCCAGCTTTTGATGATGTCATTCATGTTATACGCCATAGTAGTTATCGTGTGGGGAGTGAACTGCCAGTGAAGGAATCTGTGGAGATGGGAGTTCAAAACGTAGATGTCGGTAAATTTATCACCATTGCCAAGGATGATTTAGAAATGAAAAATGTGAGCACCCTTAAATCTTCAAATTGTTATGAAGCTACTGGCTTGAAGTCAAATATTTCTGATAAATTGGAAATTAGAAACTTGAGCACTCCTCCTAACTCAAAACCTTCCAGTTGCTCTGACTCTTTGAGCTTGAAATCAAGTATTCCTGACCATCCTGGTGTTAAGGAACAAGATGTGAAAAACCCTGATTCTCTAGTTTCAAAATCTGATTCCACTGACGATACCAAACATAACCCTCCTACAGCCAAAGAAGGAACACCAGCAAAGGAAACTTTGGATGTTAAATCTTCCAGGCAGAGAGCTGAGGCACTTGAAGGGCTGTTAGAATTGTCTGCAGATTTGCTGCAGCAAAATAGATTGGAGGAACTTGCAGTTGTTTTGAAGCCATTTGGAAAAGATCAGGTCTCCCCAAGGGAGACAGCCATTTGGTTAGCCAAGAGTCTAAAAGGATTGATGATTGAGGAAAGCGGGGGACGCTGTTAA 3087 0.4127 MGSRMDQYEIMEQIGRGAFGAAILVNHKAEKKKYVLKKIRLARQTERCRRSAHQEMALIARIQHPYIVEFKEAWVEKGCYVCIVTGYCEGGDMAALMKKSNGVYFPEEKLCKWFTQILLAVEYLHSNFVLHRDLKCSNIFLTKDQDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCIYEMAAHRPAFKAFSVMLYVIFYTMDMAGLISKINRSSIGPLPPCYSPSLKTLIKGMLRKNPEHRPTASEILKHPYLQPYVHQYCSSFCPPAACSPEKPISAVHDPQKNMAESQNSSSSSSDKGSSMSSERHIAKVVPKCGNKITEIDLPSVDGNSSSNVSTKTDEQEVMKQTHNEHHSNVVSKQPKTIKNVMMALRDEKVRETSSPMRGNRIKAGGVSTQKINTETSSKLPKPNPCVSGLKPNLEVPTIAPSKATPDSAKQMQGSHTLKHQLPMIESTPKTKPRHNVILASGPIKQVGGGGAPAKPKQKTPPSLLKPPSFPRRMRQAGLDVPNAENDTVKLSPNKIAQEPKMSHHQLTNGHLTHVSREIAREPLKAFESSSKGIQTDSSNSISSSVSIQGFELSDFATTFIDLSDPILPDHESLNHTENVESRPDSSSEKLSGETSLVTPNFQNTITSNEKASPGLTLDHLVQDSKVMFASDDSSLTNQTTTSVASGCDNISVDPSSVITQEIKNLQDISKEMTSTKSLKHPLPISGEKSVCEVNPVSQSNNRPEKVSQPKHICISPGDDKFMVRERPAAETAPLIISTKISSQKVLQEERGTVLQNPAPERPASGHLPPAFDDVIHVIRHSSYRVGSELPVKESVEMGVQNVDVGKFITIAKDDLEMKNVSTLKSSNCYEATGLKSNISDKLEIRNLSTPPNSKPSSCSDSLSLKSSIPDHPGVKEQDVKNPDSLVSKSDSTDDTKHNPPTAKEGTPAKETLDVKSSRQRAEALEGLLELSADLLQQNRLEELAVVLKPFGKDQVSPRETAIWLAKSLKGLMIEESGGRC 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi232g00039 1028 Gene3D Transferase(Phosphotransferase) domain 1 90 344 - -
Sebi232g00039 1028 CDD STKc_Nek 7 273 - -
Sebi232g00039 1028 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 5 977 - -
Sebi232g00039 1028 MobiDBLite consensus disorder prediction 489 517 - -
Sebi232g00039 1028 FunFam Serine/threonine-protein kinase Nek5 90 346 - -
Sebi232g00039 1028 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Sebi232g00039 1028 MobiDBLite consensus disorder prediction 893 963 - -
Sebi232g00039 1028 ProSiteProfiles Protein kinase domain profile. 8 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi232g00039 1028 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Sebi232g00039 1028 SUPERFAMILY Protein kinase-like (PK-like) 4 325 IPR011009 -
Sebi232g00039 1028 MobiDBLite consensus disorder prediction 919 948 - -
Sebi232g00039 1028 Pfam Protein kinase domain 8 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi232g00039 1028 MobiDBLite consensus disorder prediction 418 461 - -
Sebi232g00039 1028 MobiDBLite consensus disorder prediction 619 635 - -
Sebi232g00039 1028 MobiDBLite consensus disorder prediction 619 645 - -
Sebi232g00039 1028 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Sebi232g00039 1028 MobiDBLite consensus disorder prediction 893 914 - -
Sebi232g00039 1028 SMART serkin_6 8 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi232g00039 1028 MobiDBLite consensus disorder prediction 303 323 - -
Sebi232g00039 1028 MobiDBLite consensus disorder prediction 296 327 - -
Sebi232g00039 1028 FunFam Serine/threonine-protein kinase Nek2 5 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi232g00039 Sebi-Chr232 1135259 1140899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi232g00039 14 274 MAP Kinase Kinase Kinase AT1G53570 30.827 1.23e-33 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Sebi232g00039 Pkinase 1.1e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi232g00039 K08857 - gmx:100818943 1536.93