Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi232g00013 ATGGATGAAATTGATGTCCCTTCTCATTTCCTCTGCCCCATTTCCCTGCAACTTATGAGAGACCCTGTCACAGTTTGCACAGGAATCACTTATGACAGAGAAAACATAGAGAGATGGTTATTTTCATGCAAGAACAAAACTTGCCCTGTTACCAAACAACCCCTTTTAGACACTGACCTTATTACCCCAAATCACACTCTACGTAGATTGATCCAATCTTGGTGCACCCTTAATGCTTCTCTTGGTGTTGAACGCATTCCAACTCCAAAGCCACCAATTGACAGAACCCAAATTGTGAAACTCCTCTCTGAAGCAAAGAGGTTCCCAGATAAGCAACTCAAATGCCTTAGAAGGCTTAGATCAATTGCTTTTGAAGGTGAAAGGAACAAAAACTGTTTGGAATCTGCAGGGGCAATAGACTTCTTGGCTTCAACAATGAAGAATAACAGCATTAACACACAACAAGATTCAGCTGTTCTGAGTGAAGCAGCTATTGAATCGGCATTTGGGGTAGCTGATCCAATCCAATTGATAAGTGTGAAAACAATTCTGTTTGAGGAAATAATGAGAGTGCTTCGTGATCAGATTTCACAACAGGCTTCAAAGGCTGCATTGAAGCTTATTGTGGAGCTTTGTCCATGGGGAAGAAACAGAATCAAAGCTGTTGAAGGTGGTGCAGTTTCAGTCCTAATTGAGCTTCTTCTTGAAACCTCAGAGAGAAGAGCATGTGAACTTATGTTAATAGCTTTGGATCAACTTTGTGGTTGTGCAGAAGGGAGGGCAGAGTTGTTGAATCATGGGGCAGGAGTGGCTATTGTGTCAAAGAAAATTCTAAGGATTTCTCATGCAGCAAGTGATAGAGGGGTTAGAATTTTGGCCTCAATTTGTAGGTATTCGGCTAATTCTAGAGTAGTTCATGAAATGTTGCAAGTTGGGGCTGTGTCCAAGTTATGTTTGGTGCTTCAAGTGGATAGCAGTTTCAAGACAAAGGAAAGGGCAAAGGAGATACTCAAATTGCACTCTGCTGTTTGGAAGAATTCACCATGTATTCCTGTTCCTTTGTTATCATCCTATCCATGA 1080 0.4139 MDEIDVPSHFLCPISLQLMRDPVTVCTGITYDRENIERWLFSCKNKTCPVTKQPLLDTDLITPNHTLRRLIQSWCTLNASLGVERIPTPKPPIDRTQIVKLLSEAKRFPDKQLKCLRRLRSIAFEGERNKNCLESAGAIDFLASTMKNNSINTQQDSAVLSEAAIESAFGVADPIQLISVKTILFEEIMRVLRDQISQQASKAALKLIVELCPWGRNRIKAVEGGAVSVLIELLLETSERRACELMLIALDQLCGCAEGRAELLNHGAGVAIVSKKILRISHAASDRGVRILASICRYSANSRVVHEMLQVGAVSKLCLVLQVDSSFKTKERAKEILKLHSAVWKNSPCIPVPLLSSYP 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi232g00013 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
Sebi232g00013 359 FunFam RING-type E3 ubiquitin transferase 1 84 - -
Sebi232g00013 359 SUPERFAMILY ARM repeat 97 334 IPR016024 -
Sebi232g00013 359 CDD RING-Ubox_PUB 7 60 IPR045210 -
Sebi232g00013 359 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Sebi232g00013 359 PANTHER WDSAM1 PROTEIN 166 351 IPR045185 GO:0061630
Sebi232g00013 359 Gene3D - 96 347 IPR011989 -
Sebi232g00013 359 SUPERFAMILY RING/U-box 3 78 - -
Sebi232g00013 359 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Sebi232g00013 359 Pfam U-box domain 6 76 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi232g00013 Sebi-Chr232 277301 278520 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi232g00013 2 359 U-box Gene Family AT2G35930 50.743 2.92e-144 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi232g00013 - - gmx:100778012 600.897