Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi232g00002 ATGGGTGTCTCAGGGAAGTGGATTAGAGCATTGGTTGGTCTAAAGAAATCAGAAAAGCCAAAGTTGAAGGATAAAAATAAGTTTGGCAAGTTTCACCATCAAAGAAAGCATTCCAATGAATTCGATAATGGTAAATTTCCAAACGAATTGGATAATGATGCTAAACCACCTATTGGAGACAACAATGGCCATACAGACCTTGATGCCCATTATTCTTCTACTTCACAACAAGCACATGATGCTGCACATTATCATCAAATTATGAGGGAGGAATGGGCTGCAATACGCATTCAAACAGCATTTCGAGGATTTTTGGCCAGAAGAGCACTACGAGCTTTGAAAGGATTGGTAAGGCTTCAGGCTCTAGTAAGAGGCCATGCAGTGAGAAAACAAGCAGCAATAACGCTCCGTTGTATGCAAGCTTTGGTGAGGGTTCAGGCTCGTGTTCGATCAAGGCATGTTCGCATGACTTTGGAAAGTCAAGCAGAAAAACAGAAACATCAGCAACAGCTTCCAAATGAAGCACGAGTTCGAGACATTGAAGTAAGTAGCAGTGTAGCACTGTTATGA 570 0.4175 MGVSGKWIRALVGLKKSEKPKLKDKNKFGKFHHQRKHSNEFDNGKFPNELDNDAKPPIGDNNGHTDLDAHYSSTSQQAHDAAHYHQIMREEWAAIRIQTAFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRSRHVRMTLESQAEKQKHQQQLPNEARVRDIEVSSSVALL 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi232g00002 189 Pfam IQ calmodulin-binding motif 92 111 IPR000048 GO:0005515
Sebi232g00002 189 Pfam IQ calmodulin-binding motif 117 131 IPR000048 GO:0005515
Sebi232g00002 189 PANTHER IQ-DOMAIN 5-RELATED 1 171 - -
Sebi232g00002 189 MobiDBLite consensus disorder prediction 35 49 - -
Sebi232g00002 189 ProSiteProfiles IQ motif profile. 90 118 IPR000048 GO:0005515
Sebi232g00002 189 ProSiteProfiles IQ motif profile. 114 141 IPR000048 GO:0005515
Sebi232g00002 189 SMART iq_5 89 111 IPR000048 GO:0005515
Sebi232g00002 189 SMART iq_5 112 133 IPR000048 GO:0005515
Sebi232g00002 189 ProSiteProfiles IQ motif profile. 139 167 IPR000048 GO:0005515
Sebi232g00002 189 FunFam IQ-domain 11 89 140 - -
Sebi232g00002 189 MobiDBLite consensus disorder prediction 29 78 - -
Sebi232g00002 189 Gene3D - 91 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi232g00002 Sebi-Chr232 58935 60411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi232g00002 1 181 IQD Protein Family AT3G22190 55.959 9.82e-42 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi232g00002 - - gmx:100781346 253.062