Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi231g00033 ATGGAACAACAAGCCAACCAAATTTTGCGTATTCCTCTTGCCATTAACTACAAGGACGACGTCTTTTGCTGGGCAGGAGTAAGCAATGGGATATACAATGTGAGATCGGGCTACCATGTTGCATTGAATACCCTTAGAGAAGAATCCCAGACCACTACTGATGTATCCCTGCCTCCGAATTTTAATTGGAAAAAATGTGGGATTTGCCTTGCCAACCTAAACAACTACACTTCATGTGGAGGCTTCTCCATGGTACCCTCCCGCTGTCTCCGGACAGAGCCACTGGTAGCAGCTGCCGCGAGAATGGATTCCTCAGAGGGAAAAAGCGAAGCCCTCTGTTGCATCGAAGAGGATTCTACAGCTAACCAGAAATACGCCAAGTTCTACGATGTCTATGGACCCCAAGGTAAGGCAGATGTAGTTTTCAAGTCACCAGAAGAAAATTCAACTCTGAATCTTAGTGACATTCAAGGACTTGTAACTTGGGTGCTTGGTGAAGGATTTATGCCATCATGGGTTTTTATCAAGAATAAGCCTCTTATTCAAAAAGTGGTTATGCTTTATATGCCGGGCCTGGATGCAGCTTTGTTCTTATCACAGTCTAAAATGCTTCCCAGTTTAAAAAAATTCTGTGGCAAACCAAGGCCAGTCCTTGCCCTTAGCTGTGTATCAGATGGTATGCAGACTATAGATGCACTTCTAACTTGCAAGCAGAAAAGAAAGAGGGATCAAAATGATTCAATTATGAGGAAATCTACTCTGATATCTCAACAAGTAGAAGGCTGTGGTGGTACTGATAGTCTATCATTTATGGAGCTTACAAAAGGCATACCTTTCCCTGTTACATACTATACACTAACAGAGAAAGAACTAGAAGAAAATGGATATTCTGTCAATAAGCCAGGTTTTCTTTCTACTTTGCCTGCTCCTTCGGGATCTCCTTTTCATGAGATGTTGGCACTTGATTGTGAGATGTGCATTACAAGCGAGGGTTTTGAGCTGACAAGAGTTACTCTAGTGGATGTTAAAGGACAGGTTTTGATAGATAAATTGGTTAAACCATCAAATGCTATCACTGATTACAACACAAGATTTAGTGGAATAACGTCTGAGATGTTAGATGGGGTGACAACAAGTCTGAGAGACATTCAGGAAGAGTTTCTAAAACTGGTTTACAAAGAGACTATTCTCGTTGGGCATTCTCTGGAAAATGATTTACTAGCATTGAAGATATCTCATGACTTGGTCATTGACACAGCAGTACTATACAAACACCCCCGAGGGTCTTCTCATAAAACTGCTCTACGGTTTCTTGCTAAGAGATTTCTTTCAAGAGAGATACAGCAATCAGGGAATGGACATGACAGCATTGAAGATGCTAGAGCTACCATGGAATTGGCGCTATTAAAGATCAGAAAAGGTCCTGACTTTGGTTCCGCTCCATCCTTTATGCGTAAAAAGCTCCTTTCCATTTTGAGTGAGTCTGGCAAAACCTCCTCGTTGATTGATGATATATCCATAGTAAAACGATTTGCCTCTGAGTCTTCTCATGCAATTCCGGTAACCTCTGATGAAGAAGCACTTGCTAAGACCAACAAGGAG 1602 0.4176 MEQQANQILRIPLAINYKDDVFCWAGVSNGIYNVRSGYHVALNTLREESQTTTDVSLPPNFNWKKCGICLANLNNYTSCGGFSMVPSRCLRTEPLVAAAARMDSSEGKSEALCCIEEDSTANQKYAKFYDVYGPQGKADVVFKSPEENSTLNLSDIQGLVTWVLGEGFMPSWVFIKNKPLIQKVVMLYMPGLDAALFLSQSKMLPSLKKFCGKPRPVLALSCVSDGMQTIDALLTCKQKRKRDQNDSIMRKSTLISQQVEGCGGTDSLSFMELTKGIPFPVTYYTLTEKELEENGYSVNKPGFLSTLPAPSGSPFHEMLALDCEMCITSEGFELTRVTLVDVKGQVLIDKLVKPSNAITDYNTRFSGITSEMLDGVTTSLRDIQEEFLKLVYKETILVGHSLENDLLALKISHDLVIDTAVLYKHPRGSSHKTALRFLAKRFLSREIQQSGNGHDSIEDARATMELALLKIRKGPDFGSAPSFMRKKLLSILSESGKTSSLIDDISIVKRFASESSHAIPVTSDEEALAKTNKE 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi231g00033 534 CDD REX1_like 319 468 IPR034922 -
Sebi231g00033 534 SUPERFAMILY Ribonuclease H-like 318 470 IPR012337 -
Sebi231g00033 534 FunFam RNA exonuclease NEF-sp 315 478 - -
Sebi231g00033 534 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 128 491 IPR047021 GO:0004527
Sebi231g00033 534 Gene3D - 315 476 IPR036397 GO:0003676
Sebi231g00033 534 SMART exoiiiendus 317 476 IPR013520 -
Sebi231g00033 534 Pfam Exonuclease 320 466 IPR013520 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi231g00033 Sebi-Chr231 991900 1004220 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi231g00033 319 466 C2H2 Transcription Factor Family AT2G48100 29.814 2.50e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi231g00033 K14570 - gmx:100802793 744.577