Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi230g00116 ATGGCACACAACTTAACGGGGCAGCTTGTGGGTTCTGAGATACATGGGTTCCACACTCTGCGGGACCTGGATATTGCCAACACTATGGAGGAAGCAAAAAGCAGATGGCTTCGTCCCAATGAGATTCATGCCATACTCTGTAATCATAAATATTTCACGATCCATGTCAAGCCAGTGCATTTGCCCAAAAGTGGTACTATTGTACTATTTGACCGCAAGATGCTTAGGAATTTCCGCAAAGATGGGCACAACTGGAAAAAGAAAAATGACGGGAAAACTGTCAAAGAAGCCCATGAGCACTTAAAAGTTGGTAATGAAGAAAGGATACATGTATATTATGCACATGGCCAAGATAATGCGGGCTTTGTTCGTAGATGTTACTGGTTGCTTGATAAGAGTCTGGAGCACATAGTCCTTGTTCATTATCGTGAAACACAGGAGATGCAAGGTTCTCCTGTTACACCTGTAAATTCAAATTCAAGTTCTGGCTCACCGTTTATTTTGTCAGAAGACTTAGAATCTGGGACCAACAGTGCTTATACTGGTGGGCTTAATGGAAATTTAACAGTCAAAATTCATGAACTAAGGCTTCATGAGATTAATACACTTGAATGGGATGACCTGGTTTCAAATGTTAACACCTCTACTATACCTAATGGAGAAAGTGTTAATCTTCAGAGTAGTCATCCTATACCTTTTGGTGGTGTTGATTCTGTGGGCACTTCAGTGAATCAGGGCTTGCAAAGTCAGGATCAGGGCTTGCAAAGTCAGGACAGCTTCGGAAAGTGGATAAACAACATGATATCTGATACACCATGTTCTGTAGATGAGTCAGCTCTTGAATCATCAATTTCTTCTTCTGTTCATGAACCATATTCATCACTGGTGGTGGATAATCAGCGATCTTCTTTGCCAGAACAAGTATTCAATCTCACCGAGGTGTCCCCTGTCTGGGCGTCTTCCACTGAGAAAACAAAGGTCCTGGTAACTGGTTTTTTTAATCATGATTATCAACACATTGCAAAGTCCAATCTACTGTGTGTCTGTGGGGATGTAAGTGTTCCTGTAGAAATTGTTCAGGCTGGGGTTTACCGATGCTGGGTATTACCACATTCTCCTGGATTCGTGAATCTCTATTTGAGCTTTGATGGCCATAAGCCTATTAGCCAAGTTGTTAATTTTGAGTATCGCACACCTATTTTGCATGATCCTGCTGCTTCAATGGAAGAGAAATACAACTGGAATGAATTTCGACTTCAGACGAGACTTGCTCATTTGCTCTTTACTACACAAAAGAACCTTGATATTTACTCTAGTAAAGTATCACCTAATGCACTGGAAGAGGCTAAAAAATTTGCCCTCAAAACATCATATATTTCCAAAAGTTGGCAGTACCTGATGAAGTCAATTGGTGACAATACAACTCCGTTTTCACAAGCAAAAGATGACTTGTTTGAAATTGCATTGAAAAACAAACTAAAGGAATGGCTTTTGGAACGGATTCTCTTAGGTTGTAAGAGTACTGAGTATGATGCACAAGGCCAAGGAATAATTCATTTGTGCACAGTTTTGGGATATACTTGGGCTATTTCCTTATTTTCATGGTCAGGCTTGTCGCTGGATTTCCGTGACAAATTTGGATGGACAGCTCTTCATTGGGCAGCATATTATGGAATGGAGAAGATGGTTGCAACTCTGTTGTCTTGTGGGGCAAGGCCAAACTTAGTCACGGACCCAACTCCAGAAAATCCTGGTGGATGTACTGCTGCTGATCTTGCTTATAATAAGGGATATGATGGCTTAGCAGCTTATCTTTCAGAGAAGTCTCTGGTTGAGCAGTTTAATGACATGAGCTTAGCTGGAAATATCAGTGGCTCACTGGAAACTAGCACATCTGATCCAGTAAATTCTGAGAACCTTACTGAGGACCAGCTGTACCTAAAGGATACATTGGCAGCTTACCGAATAACTGCTGAGGCAGCAGCACGCATACAAGCTGCATTTAGGGAGCACTCATTAAAATTGCGATCTAAGGCAATTGAATTTTGTAACCCAGAGGAAGAAGCACGCAAAATAGTAGCAGCAATGAAGATTCAACATGCCTTCCGCAGCTATGAAACCAGGAAAATGATGACAGCTGCTGCGCGGATCCAGCATAGATTCCGTACATGGAAATATCGTAGAGAATTTCTCCATATGCGACGTCAGGCTATTAGAATTCAAGCTGCATTCAGGGGCTTTCAAGTGCGGAAACAATATCGCAAAATCATATGGTCTGTTGGGGTGCTTGAGAAAGCAATCCTGCGTTGGCGTTTAAAGAGAAAAGGCTTCCGCGGCCTGCAGGTGAATCCTGTCCAAGAAATCAAAGATGAGAAGCAGGAAAGTGATGTAGAAGAGGATTTCTTCCGAACTGGTAGGAAACAAGCAGAAGAACGTGTTGAGAGGTCTGTAGTACGTGTCCAGGCCATGTTCCGTTCCAAGAAAGCACAACAAGAGTATACCAGGATGAAGATGGCACATAGTCAAGTGAAGCTGGAACTGGAATTAGAAGAACTACTCAATTCTGAAGTTGACATGTTAACAACGCAGACATCCTAG 2598 0.4207 MAHNLTGQLVGSEIHGFHTLRDLDIANTMEEAKSRWLRPNEIHAILCNHKYFTIHVKPVHLPKSGTIVLFDRKMLRNFRKDGHNWKKKNDGKTVKEAHEHLKVGNEERIHVYYAHGQDNAGFVRRCYWLLDKSLEHIVLVHYRETQEMQGSPVTPVNSNSSSGSPFILSEDLESGTNSAYTGGLNGNLTVKIHELRLHEINTLEWDDLVSNVNTSTIPNGESVNLQSSHPIPFGGVDSVGTSVNQGLQSQDQGLQSQDSFGKWINNMISDTPCSVDESALESSISSSVHEPYSSLVVDNQRSSLPEQVFNLTEVSPVWASSTEKTKVLVTGFFNHDYQHIAKSNLLCVCGDVSVPVEIVQAGVYRCWVLPHSPGFVNLYLSFDGHKPISQVVNFEYRTPILHDPAASMEEKYNWNEFRLQTRLAHLLFTTQKNLDIYSSKVSPNALEEAKKFALKTSYISKSWQYLMKSIGDNTTPFSQAKDDLFEIALKNKLKEWLLERILLGCKSTEYDAQGQGIIHLCTVLGYTWAISLFSWSGLSLDFRDKFGWTALHWAAYYGMEKMVATLLSCGARPNLVTDPTPENPGGCTAADLAYNKGYDGLAAYLSEKSLVEQFNDMSLAGNISGSLETSTSDPVNSENLTEDQLYLKDTLAAYRITAEAAARIQAAFREHSLKLRSKAIEFCNPEEEARKIVAAMKIQHAFRSYETRKMMTAAARIQHRFRTWKYRREFLHMRRQAIRIQAAFRGFQVRKQYRKIIWSVGVLEKAILRWRLKRKGFRGLQVNPVQEIKDEKQESDVEEDFFRTGRKQAEERVERSVVRVQAMFRSKKAQQEYTRMKMAHSQVKLELELEELLNSEVDMLTTQTS 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi230g00116 865 ProSiteProfiles IQ motif profile. 733 757 IPR000048 GO:0005515
Sebi230g00116 865 ProSiteProfiles Ankyrin repeat profile. 546 578 IPR002110 GO:0005515
Sebi230g00116 865 SUPERFAMILY Ankyrin repeat 484 608 IPR036770 -
Sebi230g00116 865 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 24 842 - -
Sebi230g00116 865 ProSiteProfiles CG-1 DNA-binding domain profile. 25 151 IPR005559 GO:0003677
Sebi230g00116 865 SMART iq_5 732 754 IPR000048 GO:0005515
Sebi230g00116 865 SMART iq_5 812 834 IPR000048 GO:0005515
Sebi230g00116 865 SMART iq_5 690 712 IPR000048 GO:0005515
Sebi230g00116 865 SUPERFAMILY E set domains 310 397 IPR014756 -
Sebi230g00116 865 Gene3D Immunoglobulins 305 400 IPR013783 -
Sebi230g00116 865 ProSiteProfiles Ankyrin repeat region circular profile. 546 574 - -
Sebi230g00116 865 ProSiteProfiles IQ motif profile. 694 720 IPR000048 GO:0005515
Sebi230g00116 865 FunFam Calmodulin-binding transcription activator 2 709 757 - -
Sebi230g00116 865 FunFam Calmodulin-binding transcription activator 5 305 401 - -
Sebi230g00116 865 ProSiteProfiles IQ motif profile. 710 736 IPR000048 GO:0005515
Sebi230g00116 865 Gene3D - 709 757 - -
Sebi230g00116 865 Pfam CG-1 domain 31 144 IPR005559 GO:0003677
Sebi230g00116 865 FunFam calmodulin-binding transcription activator 5 476 616 - -
Sebi230g00116 865 SMART ANK_2a 546 575 IPR002110 GO:0005515
Sebi230g00116 865 SMART ANK_2a 585 616 IPR002110 GO:0005515
Sebi230g00116 865 Pfam Ankyrin repeats (3 copies) 488 575 IPR002110 GO:0005515
Sebi230g00116 865 Pfam IQ calmodulin-binding motif 735 754 IPR000048 GO:0005515
Sebi230g00116 865 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 645 760 IPR027417 -
Sebi230g00116 865 ProSiteProfiles IQ motif profile. 814 842 IPR000048 GO:0005515
Sebi230g00116 865 Gene3D - 473 615 IPR036770 -
Sebi230g00116 865 SMART CG_1_2 29 146 IPR005559 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi230g00116 Sebi-Chr230 1297693 1306424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi230g00116 29 846 CAMTA Transcription Factor Family AT3G16940 58.888 0.0 967
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Sebi230g00116 CG-1 9.1e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi230g00116 K21596 - gmx:100819198 1329.69