Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi230g00111 ATGATAATGGGGAGAGCTCCTTGCTGTGAGAAAGTTGGATTGAGAAAAGGAAGATGGAGTGCTGAAGAGGATAAGATCTTAACCGATTACATCCACCAATATGGTGAAGGATCTTGGAGGTCCTTGCCCAAAAATGCAGGTTTGTTAAGGTGTGGGAAGAGTTGCAGACTAAGATGGATTAACTATTTGAGGGGAGACGTGAAGAGAGGGAACATCACTTCTCAAGAGGAACAGATCATCGTCAAGTTGCATGCTGCTCTTGGTAATAGGTGGTCTGTGATAGCAGCACATTTACCAGGAAGAACAGACAATGAAATAAAGAACTATTGGAACTCTCATTTGAGGAGAAAGATTTACTGTTTCATGAGATCATTAAATGAGTCTCCACCAATTGACATGGCTACTGTAAAAGTAGCTGCTGCTACATCCAAGAGAAGAGGCAGAGGAGGGACAAGAATTTATAAGCCTGCATCATCCTTGGAAGAGGACAAGAAGAAATTTGAATCAATAGTGCCTAAAATGGAACCAACTTATTCACAAAGTTGTAATAAAAGAGAAGCTGAAGAAATTTCGATGATGGATGATGCTTATTTTGAAATGGATCAGGGCCACACAGCTGATGGAGATATTAAGGGCTTAGGACCATATCAATGGTCAGTTGATGAAATTATGAAACTTAGTGACATGTTTGAAAATGGGGTAGGGAATTTAACCCTTCAAGAGGAGCCTAATGGAAATGACTACTGTGGGCAGATGCAGATAATGGGAACAAGAACTCAAGAGGAGAGCAAAAGTGGTGTTTGGAGCTCATCAAATGCAGAGAGTACTGGAGATCAATGGTACACTAGTTGCTCCTCAGTGAATTCTACCATTAATTATCAATGGTGTGATTGGGATTTGGCAGGTAGTGTTCAATCCCATAATCACTGGGACCCTTGTGAAGAAGACCAAATAATGAATTGCTTGTGGGGTGCTAGCATTGCTGGAATAAATGACTTTCATCAATAA 1008 0.4067 MIMGRAPCCEKVGLRKGRWSAEEDKILTDYIHQYGEGSWRSLPKNAGLLRCGKSCRLRWINYLRGDVKRGNITSQEEQIIVKLHAALGNRWSVIAAHLPGRTDNEIKNYWNSHLRRKIYCFMRSLNESPPIDMATVKVAAATSKRRGRGGTRIYKPASSLEEDKKKFESIVPKMEPTYSQSCNKREAEEISMMDDAYFEMDQGHTADGDIKGLGPYQWSVDEIMKLSDMFENGVGNLTLQEEPNGNDYCGQMQIMGTRTQEESKSGVWSSSNAESTGDQWYTSCSSVNSTINYQWCDWDLAGSVQSHNHWDPCEEDQIMNCLWGASIAGINDFHQ 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi230g00111 335 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 3 185 - -
Sebi230g00111 335 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Sebi230g00111 335 CDD SANT 73 114 IPR001005 -
Sebi230g00111 335 Gene3D - 73 118 - -
Sebi230g00111 335 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Sebi230g00111 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Sebi230g00111 335 CDD SANT 18 63 IPR001005 -
Sebi230g00111 335 Gene3D - 13 69 - -
Sebi230g00111 335 FunFam Myb transcription factor 13 69 - -
Sebi230g00111 335 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Sebi230g00111 335 SMART sant 68 116 IPR001005 -
Sebi230g00111 335 SMART sant 15 65 IPR001005 -
Sebi230g00111 335 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Sebi230g00111 335 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Sebi230g00111 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi230g00111 Sebi-Chr230 1205406 1209300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi230g00111 3 311 MYB Transcription Factor Family AT5G49330 43.314 3.45e-74 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi230g00111 Myb_DNA-binding 6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi230g00111 K09422 - gmx:100819041 418.313