Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi230g00108 ATGAGTGCATCATCAGAAAACCCTATTCATAACAATAGCTCTGAGGGTGAGGGGAAAGCAAATTCGTCGACCTCTAGATCTTCTTCAACAAAGTTGATGTTATTTGGTTTCCCCTTAACTCCCAGTAGCCAAGAAGAAGACATGGGTGCAGCAGCAGCACCAGTGATAGCGAAGGCCCTTAGGAGTAGTATTTTCAGATGTCACTTCTGTTGCCGTGAATTTTCCAATTCACAAGCTTTGGGAGGACATCAAAATGCGCACAGGAGAGAACGGCAAAGAGCACACTTTTTTCCGCTTCTTCCCCATCATCAACGCTTCATAAAAACTTCTTCATCTTCCCCTTATGGCTATCCTATCATGGCTTCTCCTCCACGTGGGTCAGTAGCACATCATGAGGAATTACCTTGTGGGTTCCATCCACAACATGAGGGACCTCTTTTTATGAGAGCAGCAGGCACGTCCAGAAAAATTGTGCCTTTCAACAAGTACAGAACCTTGATGGTGATGTTGATCTTAACTTGA 522 0.4464 MSASSENPIHNNSSEGEGKANSSTSRSSSTKLMLFGFPLTPSSQEEDMGAAAAPVIAKALRSSIFRCHFCCREFSNSQALGGHQNAHRRERQRAHFFPLLPHHQRFIKTSSSSPYGYPIMASPPRGSVAHHEELPCGFHPQHEGPLFMRAAGTSRKIVPFNKYRTLMVMLILT 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi230g00108 173 PANTHER ZINC FINGER PROTEIN 5 19 124 IPR044299 GO:0010090
Sebi230g00108 173 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Sebi230g00108 173 MobiDBLite consensus disorder prediction 1 27 - -
Sebi230g00108 173 SUPERFAMILY beta-beta-alpha zinc fingers 63 92 IPR036236 -
Sebi230g00108 173 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 92 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi230g00108 Sebi-Chr230 1176318 1176839 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi230g00108 27 106 C2H2 Transcription Factor Family AT1G67030 40.000 1.98e-14 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi230g00108 - - vvo:131599717 113.235