Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi230g00099 ATGAATCTCAAAGCCTCCATGTCAACGGCAAGTTCAAGTTCTTCTCTCAAGTCCGGCGACGGCGTCTCCGACCAGTTTCCGGCGGGTCTCAGGGTACTGGTGGTGGATGATGACCCCACTTGCCTTATGATCCTTGAGAGGATGCTCCGTGCTTGCCTCTATGAAGGTGAGCATATTGGGTTGGAGATGGACCTTCCGGTTATAATGATGTCAGCTGATGATGGAAAGAATGTGGTAATGAAGGGTGTGACACATGGTGCTTGTGATTACTTGATTAAACCTGTGGCACAGAAGAAGGAGATCGACAACAAAAGGCATTTGATGATGCAGATTACTCATCCTCAGCGAATGAAGCAAAGCAACTCAAAGAAGAGGAGGGATATTGAGGATGAGGATGGAGAGGACAGGGAGGATACTTCCTCGTTAAAGAAGCCACGGGTTGTTTGGTCTGTTGAGCTTCATCAACAGTTCATGGCTGCTGTGAATCAACTAGGAATTGATAAGGCTGTTCCTAAAAAGATTCTGGAATTGATGAATGTTCCTGGGCTCACTAGAGAAAATGTTGCTAGCCACCTCCAGAAATACCGTTTGTATCTTCGAAGGGTGAGTGGAGTTTCCCAGCAGCAGAGCAACTTTAATAATTCCTTCATCAGCTCACAAGATTCAACATTTGGGGCTACTTCAATAAATGGAATAGATCTTCAAACTCTTCCAGTTGCTGGCCAGCTCCAAGCACAAAGTCTAGCCAAGCTTCAAGCAGCAGGACTTGGCAGGTCACTTGCAAAAGCAGGTATTTCCATGCCTCTAGTTGAGCAAAAGAACCTTTTCAGTTTTGAGAACTCAAAATTAAGATTTGGAGAAGGGCAACTGCAAAACTTGAGCAGTAGTAAACCAATGAACTTTCTTCATGGAATCCCTACCAACATGGAACCAAAGCAGTTTGCCAATTTGCACCAGTCTACCCAATCCCTTGGAAACTTTAATATGCGATTCAACGCTTCTGCTGCGCAGAGAAGCCCCTTGTTGATGCAGATAACTCAGTCTCAACCAAGAGGTAATGGGATTGCTGATACCAGCAACATAACTTCTGCCTATAATCCAGTTCCACAAAGGTCTTCATTGTTGAGTTTTCCCATGAATCAAACCACAGAAATGCCAGTGAGTAGTTTCCCTCTTAGAAGCACTCCAGGCGTATCCAGTATCACTACAAAAGGCATGTTCCATGAGGAAGTAGGTACTTCAGGAATTAAAGGATCTAGTGGATTTGCTCCAAGTTATGATATTTTTAATGAACTCCATCAGAAATCCCATGATTGGGACTTACCAAACACTGGCCTGACCTATGATGCTTCTCAGCATGCAAATCCTTTACAAAGTAACATTGATGACTCACCATCAACTTTAGTCCATCAAGGCTTTTCCTCTATCCAACACACTGGACAAAATAGAGATGCTACTTTGATTGGAAAAGCTATGATCTCAATAGATGAAGGCATGAATCAAGGTAATCTCCAAAATGTCGGTCAAGACCTCAATTCGCTTCTTGTTGACAATTCAGTAAGAATTAAGGCTGAAAGCAATCCTGATCCAAGCTCCCAGATTAACCTCTTCTCTGAGCCATATGGACAGGAGGATCTTATGAGTGCACTTCTGAAACAGCAAGAAGGCATTGGACAAGTTGAAAATGAGTTTGACTTCGATGGATATTCCATAGACAACATTCCAGTTTAG 1731 0.4333 MNLKASMSTASSSSSLKSGDGVSDQFPAGLRVLVVDDDPTCLMILERMLRACLYEGEHIGLEMDLPVIMMSADDGKNVVMKGVTHGACDYLIKPVAQKKEIDNKRHLMMQITHPQRMKQSNSKKRRDIEDEDGEDREDTSSLKKPRVVWSVELHQQFMAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRVSGVSQQQSNFNNSFISSQDSTFGATSINGIDLQTLPVAGQLQAQSLAKLQAAGLGRSLAKAGISMPLVEQKNLFSFENSKLRFGEGQLQNLSSSKPMNFLHGIPTNMEPKQFANLHQSTQSLGNFNMRFNASAAQRSPLLMQITQSQPRGNGIADTSNITSAYNPVPQRSSLLSFPMNQTTEMPVSSFPLRSTPGVSSITTKGMFHEEVGTSGIKGSSGFAPSYDIFNELHQKSHDWDLPNTGLTYDASQHANPLQSNIDDSPSTLVHQGFSSIQHTGQNRDATLIGKAMISIDEGMNQGNLQNVGQDLNSLLVDNSVRIKAESNPDPSSQINLFSEPYGQEDLMSALLKQQEGIGQVENEFDFDGYSIDNIPV 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi230g00099 576 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 119 353 IPR044841 GO:0003700|GO:0006355
Sebi230g00099 576 SUPERFAMILY CheY-like 29 96 IPR011006 -
Sebi230g00099 576 NCBIfam myb-like DNA-binding domain, SHAQKYF class 144 197 IPR006447 GO:0003677
Sebi230g00099 576 Gene3D - 56 141 - -
Sebi230g00099 576 Gene3D - 142 203 - -
Sebi230g00099 576 Pfam Myb-like DNA-binding domain 146 196 IPR001005 -
Sebi230g00099 576 MobiDBLite consensus disorder prediction 110 141 - -
Sebi230g00099 576 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 143 200 IPR017930 -
Sebi230g00099 576 ProSiteProfiles Response regulatory domain profile. 1 108 IPR001789 GO:0000160
Sebi230g00099 576 MobiDBLite consensus disorder prediction 1 21 - -
Sebi230g00099 576 FunFam Two-component response regulator 140 203 - -
Sebi230g00099 576 SUPERFAMILY Homeodomain-like 142 201 IPR009057 -
Sebi230g00099 576 MobiDBLite consensus disorder prediction 121 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi230g00099 Sebi-Chr230 1083210 1086446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi230g00099 57 576 Response Regulator Gene Family AT3G16857 41.368 5.32e-123 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Sebi230g00099 Myb_DNA-binding 1.2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi230g00099 - K14491 gmx:100809583 754.592