Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi230g00078 ATGAAACCGTCGCCACCGCCGTCGCCTCCGGCTCCAGGGGAGATGTCGCCGGTCCCTTCATTCCGGCAAGGCGGTGCCGAGGCTCATAGGATTTTCGACGAATTGCCGAAAGCCACCATCGTCTCCGTTTCTCGTCCCGACGCCGGCGACATCAGTCCCATGCAACTCTCTTACACCATTCAGGTTCAGTACAAACAGTTCAAGTGGGAGCTAGTGAAGAAAGCTCATCAAGTATTCATTTTGCATTTTGCACTAAAGAAACGTGCCTTTATTGAGGAAATTCATGAGAAGCAAGAACAAGTTAAAGAATGGCTTCAAAATCTAGGAATCGGAGAACACACCGCTATGGTGCAAGATGATGATGAAGCTGACGATGAAACTGTTCCTTTACATACTGATGAAAGTGCTAAAAACAGAGATGTTCCATCTAGTGCTGCTCTACCAATTATACGGCCAGCTATAGGTAGACAACATTCTATTGCAGACAGGGCAAAGAGTGCAATGCAAGGGTATCTGAATCACTTTTTGGGAAATATCAGTATTGTTAACTCTCGAGAGGTGTGCAAGTTTTTGGAGGTATCAAGGTTATCTTTTTCACCTGAATATGGCCCTAAGCTGAAGGAAGAATATGTGATGGTGAAGCATCTGCCCAAAATTCAAAAGGACGATGATTCCAGAAAGTGTTGTATGTCTGCCTGTTTTAGTTGTTGTAATGACAACTGGCAAAAGGTGTGGGCAGTGCTGAAACCTGGATTCTTGGCATTGTTGGCAGATCCTTTTGATATGCAGCCCTTAGACATTATTGTTTTTGATGTACTGCCTGCCTCAGATAGAAATGGGGATGGTCGTCTATCACTAGCAAGTGAAATGAAGGAACGAAATCCTTTACGCCATTCATTCAAGGTGACTTGTGGAACCCGGAGCATTAGAATTAGAGTGAAAAGTAGCAGTAAAGTTAAAGATTGGGTTGCTGCAATTAATGATGCTGGACTCAGGCCTCCTGAAGGTTGGTGTCATCCTCATCGCTATGGTTCTTTTGCTCCTCCAAGAGGCTTAATCGAAGATGACAGTCAAGCCCAGTGGTTTATAGATGGGCAAGCAGCATTTGAGGCCATTGCTTCTTCAATTGAAGATGCAAAATCAGAGATATTTATTTGTGGGTGGTGGCTGTGCCCAGAACTGTATCTACGGCGACCTTTCCACACTCATGCTTCATCAAGGCTTGATCATTTGTTGGAAGCAAAAGCTAAGCAAGGGGTTCAGATTTACATTCTTCTCTATAAGGAGGTGGCTCTTGCTTTGAAAATAAACAGTGTTTATAGCAAGAGAAAGCTTCTTAGCATTCATGAGAATGTGAGGGTATTACGCTATCCTGATCACTTTTCTACTGGTGTTTACCTGTGGTCGCACCATGAAAAACTTGTCATTGTTGATAACCACATTTGCTTTATTGGAGGACTGGATTTATGCTTTGGTCGTTATGACACATCTGAGCATAAAGTGGGAGATTTCCCTCCTCTAATCTGGCCTGGAAAGGACTATTATAACCCAAGAGAATCTGAACCAAATTCATGGGAAGATACTATGAAAGATGAATTGGAACGTGAAAAATATCCTCGTATGCCTTGGCATGATGTTCACTGTGCCCTTTGGGGACCACCTTGTCGTGACATTGCGAGGCACTTTGTTCAGCGTTGGAATTATGCCAAGAGGAACAAAGCTCCATATGAGCAAGCAATACCATTACTTATGCCTCAGCATCATATGGTTATTCCACATTACTTGGGAAGAAGCAGTGAGATACAGATTGAAAGCAACAACACTGACAATCATAGAGTCATCAAGAGAGAAGATTCATTTTCCTCATCTTCTCAAGACCAAGATATTCCTCTACTTTTGCCTCAGGAGTCTGGTCCAGATTCTCCTGAAGGAGACTCAAAACCAAATGGGCTAATCTCCTTTCTACATCACCTTGACAAGCCAAGAAGGATAAGCAATGGTCTTCCTTTCTCATTCCGGAAGGCGAAAGTTGCAGCAGTTGGTCCAGATACACCAATGCAGGGCTTTGTAGATGATCTTGACTCTGAGCATCATCATGAAAAAATGTCTCTGGATAGAGTAGCTCATTTTGATTTACAAAATACAGATCCAGATTGGTGGGAAACACAAGAACGGGGTGATCAAGGAGGTTTTGCGGATGAATCAGGACAAATTGGTCCTCGTGCTTCCTGCCGTTGTCAGGTTATTAGGAGCGTCAGTCAATGGTCTGCTGGAACAAGCCAAACTGAAGAGAGCATCCACAGTGCTTATTGCTCTCTTATTGAGAAAGCTGAACATTTCATCTACATTGAGAATCAGTTTTTTATCTCAGGTCTTTCTGGAGATGAGATGATACGTAATCGTGTGTTAGAAGCTTTATATCGACGGATTATGCGAGCTTACAATGACAAAAAAAATTTCAGGGTTATTGTTGTCATACCCCTCCTGCCTGGCTTCCAGGGGGGCCTTGATGATAGTGGTGCAGCATCTGTGAGAGCCATAATGCACTGGCAGTATCGAACCATTTGCAGAGGGCAGAATTCTATCTTGCATAATCTTTTTGAACTTCTTGGTTCAAGAATACATGATTACATCTCTTTTTATGGCCTGAGGTCTTATGGTAGACTCTCTGATGGTGGTCCTGTGGCAACCAGCCAGGTATATGTTCACAGTAAAATCATGATTGTTGATGATTGTGTAAGTTTGATTGGATCTGCAAATATTAATGATAGGAGCTTACTTGGATCCAGAGATTCTGAGATTGGTGTAGTTATAGAAGACAAAGAGTTGATAGATTCATATATGGATGGAAAGCCTTGGAAAGCAGGAAAGTTTTCTCTGACACTCCGGTTATCATTATGGTCTGAGCACTTGGGTCTCCCAGCAGGAGAGGTCAATCAAATAATGGACCCAGTTGTTCAGTCTACTTACAAGGATATTTGGATGACAATAGCAAAGACAAATACTGCAATTTATCAGGATGTCTTTTCTTGTGTACCTAATGATCTGATACACACCAGACTTGCTTTCAGACAAAGCGTGGCTTTTTGGAAAGAAAGAATTGGACACACGACCATTGATTTAGGAATAGCCCCTGAAAAATTAGTATCCTATCAGGATGGAGATATAAAAAACACCGATCCCTTGGAGAGATTAGCATCCGTAAGGGGTCATCTTGCCATTTTCTGA 3228 0.426 MKPSPPPSPPAPGEMSPVPSFRQGGAEAHRIFDELPKATIVSVSRPDAGDISPMQLSYTIQVQYKQFKWELVKKAHQVFILHFALKKRAFIEEIHEKQEQVKEWLQNLGIGEHTAMVQDDDEADDETVPLHTDESAKNRDVPSSAALPIIRPAIGRQHSIADRAKSAMQGYLNHFLGNISIVNSREVCKFLEVSRLSFSPEYGPKLKEEYVMVKHLPKIQKDDDSRKCCMSACFSCCNDNWQKVWAVLKPGFLALLADPFDMQPLDIIVFDVLPASDRNGDGRLSLASEMKERNPLRHSFKVTCGTRSIRIRVKSSSKVKDWVAAINDAGLRPPEGWCHPHRYGSFAPPRGLIEDDSQAQWFIDGQAAFEAIASSIEDAKSEIFICGWWLCPELYLRRPFHTHASSRLDHLLEAKAKQGVQIYILLYKEVALALKINSVYSKRKLLSIHENVRVLRYPDHFSTGVYLWSHHEKLVIVDNHICFIGGLDLCFGRYDTSEHKVGDFPPLIWPGKDYYNPRESEPNSWEDTMKDELEREKYPRMPWHDVHCALWGPPCRDIARHFVQRWNYAKRNKAPYEQAIPLLMPQHHMVIPHYLGRSSEIQIESNNTDNHRVIKREDSFSSSSQDQDIPLLLPQESGPDSPEGDSKPNGLISFLHHLDKPRRISNGLPFSFRKAKVAAVGPDTPMQGFVDDLDSEHHHEKMSLDRVAHFDLQNTDPDWWETQERGDQGGFADESGQIGPRASCRCQVIRSVSQWSAGTSQTEESIHSAYCSLIEKAEHFIYIENQFFISGLSGDEMIRNRVLEALYRRIMRAYNDKKNFRVIVVIPLLPGFQGGLDDSGAASVRAIMHWQYRTICRGQNSILHNLFELLGSRIHDYISFYGLRSYGRLSDGGPVATSQVYVHSKIMIVDDCVSLIGSANINDRSLLGSRDSEIGVVIEDKELIDSYMDGKPWKAGKFSLTLRLSLWSEHLGLPAGEVNQIMDPVVQSTYKDIWMTIAKTNTAIYQDVFSCVPNDLIHTRLAFRQSVAFWKERIGHTTIDLGIAPEKLVSYQDGDIKNTDPLERLASVRGHLAIF 1075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi230g00078 1075 Pfam PLD-like domain 771 947 IPR025202 -
Sebi230g00078 1075 SMART pld_4 898 925 IPR001736 GO:0003824
Sebi230g00078 1075 SMART pld_4 466 493 IPR001736 GO:0003824
Sebi230g00078 1075 CDD PLDc_vPLD1_2_yPLD_like_2 758 942 - -
Sebi230g00078 1075 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 466 493 IPR001736 GO:0003824
Sebi230g00078 1075 ProSiteProfiles PH domain profile. 240 331 IPR001849 -
Sebi230g00078 1075 Gene3D Endonuclease Chain A 721 958 - -
Sebi230g00078 1075 CDD PLDc_vPLD1_2_yPLD_like_1 359 503 - -
Sebi230g00078 1075 PIRSF PLD_euk 593 1075 IPR016555 GO:0004630|GO:0006654|GO:0048017
Sebi230g00078 1075 PIRSF PLD_euk 26 603 IPR016555 GO:0004630|GO:0006654|GO:0048017
Sebi230g00078 1075 MobiDBLite consensus disorder prediction 618 651 - -
Sebi230g00078 1075 Pfam Phospholipase D Active site motif 466 493 IPR001736 GO:0003824
Sebi230g00078 1075 SUPERFAMILY Phospholipase D/nuclease 315 586 - -
Sebi230g00078 1075 SUPERFAMILY PH domain-like 237 329 - -
Sebi230g00078 1075 Coils Coil 87 107 - -
Sebi230g00078 1075 PANTHER PHOSPHOLIPASE D 160 1050 IPR015679 -
Sebi230g00078 1075 Gene3D - 234 331 IPR011993 -
Sebi230g00078 1075 SUPERFAMILY Phospholipase D/nuclease 740 949 - -
Sebi230g00078 1075 MobiDBLite consensus disorder prediction 1 16 - -
Sebi230g00078 1075 MobiDBLite consensus disorder prediction 1 23 - -
Sebi230g00078 1075 FunFam Phospholipase 732 952 - -
Sebi230g00078 1075 CDD PH_PLD 182 329 - -
Sebi230g00078 1075 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 898 925 IPR001736 GO:0003824
Sebi230g00078 1075 Gene3D Endonuclease Chain A 351 591 - -
Sebi230g00078 1075 SMART PH_update 205 333 IPR001849 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi230g00078 Sebi-Chr230 886606 901405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi230g00078 15 982 Phospholipase D Gene Family (Wang group) AT3G16785 74.897 0.0 1402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi230g00078 K01115 - gmx:100782187 2012.27