Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi230g00065 ATGGTGGCTTCCGTGGCCGTTGTTGGCATGACCCGTGGAGGCGAACCCAAAGATCAAGATGGACACTTTCTTCTTGGTAATATCCACATCCATAACTCTCAAAATAACCAAGATGTTCTTTGCCAATCAACAGAATACCAAGAAACTTGCCAAAAGAGCCTTGAAAAAGCATCCAATGGAACCAAGGACATGAAAGAGCTCGTCAAAGCCGCATTCAATGCCACAGCAGAGGAGTTATTGAACCGCATTCATAACTCCACCCTCTACAATGAGTTGGCCAAGGACAACATGACAAGACAGGCCATGGATATCTGCAAGGAAGTGTTGGATTATGCTGTTGATGGGATTCACAAATCTGTTAACACATTGGACAATTTTGAGTTAGACAAATTGGGTGAATATATCTATGACCTCAAGGTTTGGCTCACAGGAACACTCTCTCACCAACAAACATGCTTGGCTGGATTTGAGAACACAACTACAGAGGCTGGTGAGATCATGGCCAAGGTGTTGAACACCACTTTGGAGCTAAGCAGCAATGCTGTGGACATGATCTCTGTGGTCTCTGGCCTATTCAAAGAACTCAACTTGAACACAAATACCAGAAAGCTTCTCTCTGATGAGGAAACACAGCATGTGGATGGTAAATTGAGCTTCCCTTTGTGGGTGAATGAAGGACAAAGGCGTCTTCTTCAGGCTCCTGAAAGCGTGAAGCCAAACGTGGTTGTGGCTCAAGATGGAAGTGGACAATTCAAAACACTCACAGAAGCTCTTAAGTCTGTTCCAGCCAACAATGCAAAGCCTTTTGTGATTTACGTTAAGGCTGGTGTGTACAATGAGATTGTCAATGTGGCCAAGGAAATGACACATGTCACAATCATTGGAGATGGTCCCACAAAGACCAAATTCACCGGCAGCCAAAATTACGTAGATGGTATCCAAACATACAACACAGCAACCTTCGGGGTTAATGGTGATAACTTCATGGCAAAGGATGTTGGATTTGAGAACACAGCAGGACCTGAGAAGCGCCAAGGAGTGGCACTTAGAGTAACAGCAGACAAAGCAGTGTTCTACAATTGCCAAATGGATGCATTCCAAGACACACTCTACGCTGAATCCCAACGTCAATTCTACCGCGACTGCACAATCTCTGGAACCATCGATGTCATCATGGGTGACGCCATTGGAGTCTTCCAGAACTGCAAGCTCAATGTGAATAAACCCGCTTTAGACGACAGCGATGATGAGGAATCCACTCAACAGCAATTCTGCACCGTCACTGCAAATGGAAGAACCAAAGCCGACAGCCCCAGTGGATTCGTCTTCCAAAATTGCCACTTCACAGGGGAACCAGAATTGGCTACTTTGAAGCCTAAAATTGCATACATTGGAAGGCCGTGGCAAGCTTATGCTAAGGTTGTGGTAATGGACTCTGTGATTGATGACGTGTACTCATCAGAAGGGTACATGGCGTGGATGGGAAGAATAAACAAAGACACGTGTACCTATTACGAGTACAATAACACAGGTCCTGGTGCTGACACGTCAGCAAGAGTGAAATGGCCAGGTGTCAAGACCATAACTGCTGATGAGGCTGCTGATTACTACCCTGGCAAGTTCTTTGGAATTGCTGATTCAAATGAACGTGTTGTAATTGTGGCTTTGTCCCTCATCTCCTTCGCATTCATGCTTTGA 1698 0.4535 MVASVAVVGMTRGGEPKDQDGHFLLGNIHIHNSQNNQDVLCQSTEYQETCQKSLEKASNGTKDMKELVKAAFNATAEELLNRIHNSTLYNELAKDNMTRQAMDICKEVLDYAVDGIHKSVNTLDNFELDKLGEYIYDLKVWLTGTLSHQQTCLAGFENTTTEAGEIMAKVLNTTLELSSNAVDMISVVSGLFKELNLNTNTRKLLSDEETQHVDGKLSFPLWVNEGQRRLLQAPESVKPNVVVAQDGSGQFKTLTEALKSVPANNAKPFVIYVKAGVYNEIVNVAKEMTHVTIIGDGPTKTKFTGSQNYVDGIQTYNTATFGVNGDNFMAKDVGFENTAGPEKRQGVALRVTADKAVFYNCQMDAFQDTLYAESQRQFYRDCTISGTIDVIMGDAIGVFQNCKLNVNKPALDDSDDEESTQQQFCTVTANGRTKADSPSGFVFQNCHFTGEPELATLKPKIAYIGRPWQAYAKVVVMDSVIDDVYSSEGYMAWMGRINKDTCTYYEYNNTGPGADTSARVKWPGVKTITADEAADYYPGKFFGIADSNERVVIVALSLISFAFML 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi230g00065 565 Pfam Pectinesterase 240 541 IPR000070 GO:0030599|GO:0042545
Sebi230g00065 565 FunFam Pectinesterase 33 189 - -
Sebi230g00065 565 SUPERFAMILY Pectin lyase-like 237 542 IPR011050 -
Sebi230g00065 565 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 188 IPR035513 -
Sebi230g00065 565 NCBIfam pectinesterase inhibitor domain 40 186 IPR006501 GO:0004857
Sebi230g00065 565 Gene3D - 237 556 IPR012334 -
Sebi230g00065 565 SMART PMEI_2 32 184 IPR006501 GO:0004857
Sebi230g00065 565 ProSitePatterns Pectinesterase signature 1. 265 284 IPR018040 -
Sebi230g00065 565 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 190 IPR035513 -
Sebi230g00065 565 PANTHER PECTINESTERASE 25 542 - -
Sebi230g00065 565 CDD PMEI-like_3 40 190 - -
Sebi230g00065 565 FunFam Pectinesterase 4 237 552 - -
Sebi230g00065 565 Pfam Plant invertase/pectin methylesterase inhibitor 40 183 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi230g00065 Sebi-Chr230 754608 756722 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi230g00065 28 542 Carbohydrate Esterase AT5G49180 45.057 2.24e-166 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi230g00065 K01051 - gmx:100784682 721.079