Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi230g00052 ATGGAGGGTAACAAGGACGAAGCATTGAGGTGCGTTCGCATCGCCGAGGAGGCGATTGCATCGGGGAACAAAGATCGCGCCCTCAAATTCATCAAAATCGCCCAGCGCCTCAACCGCGATTTGCCCGTTGACGCCTTACTCAGCATGTGCGAACGCCTCGATTCTCAGTCCTCCGCCTCTTCCTCCGACGGAAACTCCACCGCCGGAGCCGGCGGTGTTAAGACTTCGAAAGGTCCGGCGAGAGCCGAGGAAGGTTCGAGTGGAGAGAGGAATTACACGGAAGAGAACGTTCAGTTGATTAGGGAAATTAAAGGGAAGAGTGATTACTATGCAATTCTGGGCCTGGAGAAGAGTTGTTCCGTTGAGGAGATTAGAAAGGCTTATAGGAAACTATCGTTGAAGGTTCACCCTGATAAAAACAAGGCGCCAGGTTCCGAAGAGGCGTTTAAGAAGGTGTCTAAGGCTTTCAAGTGTTTGAGTGATGATGGTTCCAGGAGGCAGTATGATCAGACTGGACTTGTTGATGAATTTGATTACAATCAGCAACAGAGTTTTAGGCGCAGGAGGAGAAGGACAACTACTCATGATTTTTTCGAAGATGAGTTTGATCCTGATGAGATATTCAGGGCATTCTTCGGACAATCCGATGTGTTTGGGAGGAGAACTCATGTTTATAGGACTCGTGGAATGGGAAGTCAAAATCATAGGCACGAGTTTCAGGGTGGTGGTGGAGGAGGAGGACTTAATATCATGCTGCTGGTTCAGCTTTTGCCATTTGTGATCATATTGCTGCTTGCCTACTTGCCCTTTAATGAGCCTGACTATTCTTTGCACAAGAATTACTCCTACCAGATTCCTAAGACAATTGAGGAGTACGGGGTTCAGTTTTTTGTGAAGTCTCATGCATTTGATGTTAAGTATCCACAGGGTAGTCCTGATCGGGAAGCTATTGAGGATGATGTCATAAAGGATTATAGGAATATGCTTCGTCGCTATTGTCAAATAGAGATTCAGAGGCGCAGTTGGAATAGGAATCTGCCTGCTCCTCATTGTGAAAAGCTAAAAAACTTTGGAGTAGTAGCCTGA 1086 0.4669 MEGNKDEALRCVRIAEEAIASGNKDRALKFIKIAQRLNRDLPVDALLSMCERLDSQSSASSSDGNSTAGAGGVKTSKGPARAEEGSSGERNYTEENVQLIREIKGKSDYYAILGLEKSCSVEEIRKAYRKLSLKVHPDKNKAPGSEEAFKKVSKAFKCLSDDGSRRQYDQTGLVDEFDYNQQQSFRRRRRRTTTHDFFEDEFDPDEIFRAFFGQSDVFGRRTHVYRTRGMGSQNHRHEFQGGGGGGGLNIMLLVQLLPFVIILLLAYLPFNEPDYSLHKNYSYQIPKTIEEYGVQFFVKSHAFDVKYPQGSPDREAIEDDVIKDYRNMLRRYCQIEIQRRSWNRNLPAPHCEKLKNFGVVA 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi230g00052 361 SMART dnaj_3 107 164 IPR001623 -
Sebi230g00052 361 ProSiteProfiles dnaJ domain profile. 108 172 IPR001623 -
Sebi230g00052 361 Pfam Domain of unknown function (DUF1977) 271 341 IPR015399 -
Sebi230g00052 361 SUPERFAMILY Chaperone J-domain 104 215 IPR036869 -
Sebi230g00052 361 PANTHER AT29763P-RELATED 1 356 - -
Sebi230g00052 361 CDD DnaJ 108 161 IPR001623 -
Sebi230g00052 361 Gene3D DnaJ domain 105 223 IPR036869 -
Sebi230g00052 361 FunFam Chaperone protein dnaJ 49 104 224 - -
Sebi230g00052 361 Pfam DnaJ domain 108 169 IPR001623 -
Sebi230g00052 361 MobiDBLite consensus disorder prediction 56 72 - -
Sebi230g00052 361 MobiDBLite consensus disorder prediction 56 93 - -
Sebi230g00052 361 PRINTS DnaJ domain signature 144 164 IPR001623 -
Sebi230g00052 361 PRINTS DnaJ domain signature 110 128 IPR001623 -
Sebi230g00052 361 PRINTS DnaJ domain signature 128 143 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi230g00052 Sebi-Chr230 570147 571232 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi230g00052 103 169 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 38.028 1.86e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi230g00052 K09518 - gmx:100820432 516.538