Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi230g00046 ATGTCTCCTCCTTCTTGGCTCATCTCCCCTTCATGTTCCTCTTTAACCATAGATTCATCTTCCACCACTGCAAAACTCATAGTTCAATGGTCAAGGTTCCTCCTCCTATCTCCATGTCCTCAAAGAGCTCTTATTTCTGCAGTTGACATTCTCTTCTTGCTCATCTTCCTTGCCTTTGCAGCTCACAAACTCTATTCTCGATTCAGTTCAAATACTAACTCTACCTCTTCCATCACTAAACCACTTCTTCAGGAGAAAGACTCTGACTTTAGAGTTACCTTCTGGTTCAAACTACCCTTGTTGGTAACCGCCCTTTTGGCTATAGCTTACACGGTTCTTAGTGTCTTGGCTTTCACTCAAAGCAATCTTGCATCATGGATACAGATAGAGGCACTGTTCAGGATATGTCAAGCAATAGCAAACACAGTGATAGTGGTTCTATTGGTACATGAGAAGAAGTTCAAGGCTACCAAGCACCCTTTGTCATTGAGAGTCTATTGGATAGCAAACTTTGTGATTGCTTTCTTGTTTGCTGTTTCAGCCATTGTTCGCCTTGTAGCTGTTAATGATGTGAGGTTGGATGCTAATTTGAGAGTAGATGACATATTCTCATTGGTTAATCTTCCATTATCTGTTTTCTTTTTGATAATAGCCATGAAAGGGTCATCAGGGATTCATGTAATCAGAATAACTGATGTAGTAGTAACACCATATAATTGGCTTTCCACAGATGGGACTTTGAGTTTGAGTCCTTATGCTTATGCTTCATCTTTGTCCAAAACAGTTTGGCTTTGGATGAACCCTTTACTTGTTAAAGGGTACACAACACCCCTTAAATTGGAAGATGTTCCATCACTTCCTCCTGATTTCAGAGCAGAAAAGATGTCAGAGCTTTTTCAGATCAATTGGCCAAAGCCAGAGGAAAACAGCAAGCACCCAGTTGGGCTTACCTTGTTTAGGAGCTTTTGGAAACACATAGCTTTCACTGGCTTTCTTGCAATCATTAGGCTTGCAGTTATGTATATTGGTCCAATGCTTATCAATAGTTTTGTTGACTACTCCTCAAGGACAGATAACTCTCCCTCTGATGGTCTTGTTTTGATAGGAGTACTTTTTGCAGCAAAAGCAATTGAAGTACTCAGTGTCCACCAATTCAACTTCCATTCTCAGAAACTAGGCATGTTGATTCGTTCCAGCATCATAACTTCTGTGTACAAGAAGGGGTTGAGGTTGTCAAGTTCTTCAAGGCAAGCTCATGGAACTGGTCAGATTGTGAACCATATGGCTGTTGATGCTCAACAGTTATCAGATTTGATGTTGCAGTTTCATCCTATATGGATGATGCCATTGCAAGTTGCTGCTGCATTGGCCCTTATGTATAGCTATGTTGGTTTGTCTGTACTTGCAGCAGTGCTTGGAACTTCCTTAGTGTTTGTCTTCACTCTCTTCCGCACAAAGAGGAGCAACAGTTTCCAGTTTCGTATAATGACTAGCCGTGATTTGAGGATGAAAGCAACCAATGAGTTGCTTAACAACATGCGTGTCATTAAGTTCCAAGCTTGGGAAGAGTATTTTGGTAACAAGATTAAACAGTTTCGTGAAGCTGAGCATGGTTGGATTGGCAAGTTCTTGTACTATTTTGCTGTTAACATGGGAGTTCTGTCCACTGCTCCACTCACTGTAACTGTTCTTACCTTTGGAACTGCAACTTTCTTAGGCATTCGTTTGAATGCTGGGACTGTGTTCACAATAACTTCAGTGATCAAGATATTGCAAGAGCCTGTGAGGACCTTCCCTCAGGCACTTATCTTGATTTCTCAAGCATTAATCTCCCTAGGGAGGTTGGATGAGTTCATGAACAGTAAGGAAATGGATGGGAGTGCAGTGCAGAGAGAGGATAGCAGTGACAGTGACATAGCTGTGGAGATAAAAGATGGGAAATTCTCTTGGGATGATGAGGATGGGAATGAGGCTTTGAGAGTTGAAGACTTGGAAATTAAGAAAGGGGACCATGCTGCAATTGTAGGAACTGTTGGGTCAGGCAAGTCTTCATTATTGGCTTCTGTGTTAGGGGAAATGTTCAAGATCTCAGGAAAGGTTAGAGTTTGTGGGACGATTGCCTATGTAGCACAGACATCATGGATTCAGAATGCAACCATCCAGCAAAACATATTGTTTGGTCTACCAATGAACAGGGATAAGTACAGGGAAGCTGTAAGGGTGTGCTGCCTAGAAAAGGATCTTGAAATGATGGAACATGGAGACCAGACTGAGATTGGAGAACGAGGTATTAACCTCAGTGGTGGCCAAAAGCAACGTGTACAACTTGCTAGAGCTGTATACCAGGACTGTGACATCTATCTCCTTGATGATGTATTCAGTGCTGTTGATGCCCAAACAGGATCATTTATTTTTAAGGAATGTATCATGGGAGCTCTAAAAAACAAGACCATTTTACTTGTAACCCACCAAGTTGATTTCTTGCATAATGTTGACTCTATAATGGTGATGAGAGATGGGAGAATAGTACAAAATGGGAAGTATGATGAACTTCTCAAAGCTGGCCTGGATTTTGGTGCACTTGTGGCTGCTCATGAATCCTCTATGGAGATTGTAGAATCAAGTGACAAAGGTGGTGATGATTCTGGTCAGTCTCCAAAATTGGCTCGTATCCCTTCAAAAGAAAAGGAAAGCATAGGTGAAAAGCCTACTCAGGACCAATCTAAATCTGACAAGGCTAAAGCAAAGCTCATTGAAGATGAGGAGAGAGAAACTGGCCGTGTGGACCTTAAAGTATACAAACATTATTTCACTGAAGCATTTGGATGGTGGGGAGTAGTACTCATGGTGGCTATGTCTATGGCGTGGATTGTATCTTTCTTGGCTGGTGACTACTGGTTAGCAATTGCAACTGCAGAAGATTCTAGCATTCCTTCAAATACATTCATTATTGTCTATGCTATCATAGCAGCTGTTGCATGTATAGTGGTGATGATCAGGGCAATTTTATTTACATATTGGGGTCTAAAGACTTCTCAAAGTTTCTTCATTGGAATGCTTAATAGCATCCTGCATGCACCAATGTCATTCTTTGACACCACTCCTTCTGGCAGAATTTTGAGTCGTGTATCTACTGATATACTTTGGGTTGATATATCAATTCCAATGTTAATAGGCTTCATGATGATTGCTTACTTCTCACTCATCAGCGTCCTCGTTGTCACATGTCAAAATGCTTGGGAGACTGTCTTCCTCATAATTCCACTGTTTTGGCTGAATAATTGGTATCGGAAATATTACCTTGCAACTTCTCGGGAATTGACTCGCCTTGATTCTATCACAAAAGCTCCTGTGATTCATCACTTTTCAGAGACCATTTCTGGTGTCATGACAATCCGTGGCTTCAGAAAGCAGAATGCATTTTCTGAGGAAAATATTGAAAGGGTCAATGCAAGTCTCAGAATGGATTTCCACAACAATGGAGCGAATGAATGGCTTGGTTTTCGCCTGGACTTTATGGGAGTGATTTTTCTTTGCGTTTCCACCATTTTTATGATCTTTTTGCCAAGTTCTGTTGTTAGGCCAGAATATGTTGGTTTGTCTCTATCCTATGGCCTGGCTCTCAGTGGTCTCTTGGCAGTTACCATAACTATGACTTGCACTGTTGAGAACAAAATGGTTGCAGTTGAGAGAATAAAGCAGTTTACCAACCTTCCATCAGAAGCTCCATGGAAGATCCCAGATAGGACTCCTCCTCAGAATTGGCCAAGTCATGGCAGTATCGAGTTAAATAATTTGCAGGTTCGGTATCGGCCAAATACTCCTCTAGTTCTTAAGGGAATCTCTCTCACCATTCAAGGAGGAGAAAAGATTGGTGTTGTTGGTCGTACAGGGAGTGGGAAATCAACCCTCATCCAGGTGTTATTTAGGTTGATTGAGCCTTCAGCTGGGAAAATAATTATAGATGGGATCAACATTTGCACCATTGGCCTTCATGATGTGAGGTCTAGATTTGGAATTATTCCACAAGAGCCTGTCCTCTTTCAAGGAACAGTAAGAAGCAACATTGACCCCCTTGGATTGTATTCTGAAGAAGAAATTTGGAAGAGTCTTGAGCGCTGCCAGCTGAAAGATGTGGTAGCTGCAAAGCCTGAGAAACTTGAGGCTTCAGTGGTTGATGGTGGAGACAATTGGAGTGTGGGGCAAAGGCAGCTTCTGTGTTTGGGAAGGATCATGCTAAAACGCAGCAAAATACTATTCATGGATGAGGCAACAGCATCTGTTGACTCACAAACTGATGCTGTAATACAAAAGATCATTCGGGAAGACTTTGCAGACCGTACAATTATCAGTATTGCTCACAGAATACCAACAGTCATGGATTGTGACAGGGTTATGGTGATTGATGCAGGCTTTGCAAAGGAATTTGACAAGCCATCACGTTTGCTAGAAAGGCCTTCAATTTTTGGGGCATTGGTTAAGGAGTACTCTAATAGATCAGCTTAA 4506 0.4168 MSPPSWLISPSCSSLTIDSSSTTAKLIVQWSRFLLLSPCPQRALISAVDILFLLIFLAFAAHKLYSRFSSNTNSTSSITKPLLQEKDSDFRVTFWFKLPLLVTALLAIAYTVLSVLAFTQSNLASWIQIEALFRICQAIANTVIVVLLVHEKKFKATKHPLSLRVYWIANFVIAFLFAVSAIVRLVAVNDVRLDANLRVDDIFSLVNLPLSVFFLIIAMKGSSGIHVIRITDVVVTPYNWLSTDGTLSLSPYAYASSLSKTVWLWMNPLLVKGYTTPLKLEDVPSLPPDFRAEKMSELFQINWPKPEENSKHPVGLTLFRSFWKHIAFTGFLAIIRLAVMYIGPMLINSFVDYSSRTDNSPSDGLVLIGVLFAAKAIEVLSVHQFNFHSQKLGMLIRSSIITSVYKKGLRLSSSSRQAHGTGQIVNHMAVDAQQLSDLMLQFHPIWMMPLQVAAALALMYSYVGLSVLAAVLGTSLVFVFTLFRTKRSNSFQFRIMTSRDLRMKATNELLNNMRVIKFQAWEEYFGNKIKQFREAEHGWIGKFLYYFAVNMGVLSTAPLTVTVLTFGTATFLGIRLNAGTVFTITSVIKILQEPVRTFPQALILISQALISLGRLDEFMNSKEMDGSAVQREDSSDSDIAVEIKDGKFSWDDEDGNEALRVEDLEIKKGDHAAIVGTVGSGKSSLLASVLGEMFKISGKVRVCGTIAYVAQTSWIQNATIQQNILFGLPMNRDKYREAVRVCCLEKDLEMMEHGDQTEIGERGINLSGGQKQRVQLARAVYQDCDIYLLDDVFSAVDAQTGSFIFKECIMGALKNKTILLVTHQVDFLHNVDSIMVMRDGRIVQNGKYDELLKAGLDFGALVAAHESSMEIVESSDKGGDDSGQSPKLARIPSKEKESIGEKPTQDQSKSDKAKAKLIEDEERETGRVDLKVYKHYFTEAFGWWGVVLMVAMSMAWIVSFLAGDYWLAIATAEDSSIPSNTFIIVYAIIAAVACIVVMIRAILFTYWGLKTSQSFFIGMLNSILHAPMSFFDTTPSGRILSRVSTDILWVDISIPMLIGFMMIAYFSLISVLVVTCQNAWETVFLIIPLFWLNNWYRKYYLATSRELTRLDSITKAPVIHHFSETISGVMTIRGFRKQNAFSEENIERVNASLRMDFHNNGANEWLGFRLDFMGVIFLCVSTIFMIFLPSSVVRPEYVGLSLSYGLALSGLLAVTITMTCTVENKMVAVERIKQFTNLPSEAPWKIPDRTPPQNWPSHGSIELNNLQVRYRPNTPLVLKGISLTIQGGEKIGVVGRTGSGKSTLIQVLFRLIEPSAGKIIIDGINICTIGLHDVRSRFGIIPQEPVLFQGTVRSNIDPLGLYSEEEIWKSLERCQLKDVVAAKPEKLEASVVDGGDNWSVGQRQLLCLGRIMLKRSKILFMDEATASVDSQTDAVIQKIIREDFADRTIISIAHRIPTVMDCDRVMVIDAGFAKEFDKPSRLLERPSIFGALVKEYSNRSA 1501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi230g00046 1501 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1261 1495 IPR003439 GO:0005524
Sebi230g00046 1501 ProSitePatterns ABC transporters family signature. 766 780 IPR017871 GO:0005524|GO:0016887
Sebi230g00046 1501 Gene3D - 636 867 IPR027417 -
Sebi230g00046 1501 FunFam ABC transporter C family member 5 909 1242 - -
Sebi230g00046 1501 MobiDBLite consensus disorder prediction 872 918 - -
Sebi230g00046 1501 FunFam ABC transporter C family member 4 624 882 - -
Sebi230g00046 1501 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 638 860 IPR027417 -
Sebi230g00046 1501 SUPERFAMILY ABC transporter transmembrane region 316 623 IPR036640 GO:0005524|GO:0016020
Sebi230g00046 1501 SUPERFAMILY ABC transporter transmembrane region 943 1247 IPR036640 GO:0005524|GO:0016020
Sebi230g00046 1501 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 327 607 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi230g00046 1501 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 943 1224 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi230g00046 1501 Gene3D - 1245 1493 IPR027417 -
Sebi230g00046 1501 MobiDBLite consensus disorder prediction 890 918 - -
Sebi230g00046 1501 Pfam ABC transporter 1278 1426 IPR003439 GO:0005524
Sebi230g00046 1501 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 254 1497 - -
Sebi230g00046 1501 Gene3D ABC transporter type 1, transmembrane domain 316 623 IPR036640 GO:0005524|GO:0016020
Sebi230g00046 1501 CDD ABC_6TM_ABCC_D2 942 1236 IPR044726 GO:0140359
Sebi230g00046 1501 Pfam ABC transporter 663 792 IPR003439 GO:0005524
Sebi230g00046 1501 CDD ABC_6TM_ABCC_D1 328 615 IPR044746 GO:0140359
Sebi230g00046 1501 SMART AAA_5 1287 1471 IPR003593 GO:0016887
Sebi230g00046 1501 SMART AAA_5 668 849 IPR003593 GO:0016887
Sebi230g00046 1501 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1252 1494 IPR027417 -
Sebi230g00046 1501 FunFam ABC transporter C family member 10 310 623 - -
Sebi230g00046 1501 Pfam ABC transporter transmembrane region 328 595 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi230g00046 1501 Pfam ABC transporter transmembrane region 965 1188 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi230g00046 1501 CDD ABCC_MRP_domain2 1259 1479 - -
Sebi230g00046 1501 FunFam ABC transporter C family member 3 1244 1495 - -
Sebi230g00046 1501 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 641 864 IPR003439 GO:0005524
Sebi230g00046 1501 CDD ABCC_MRP_domain1 641 841 - -
Sebi230g00046 1501 Gene3D ABC transporter type 1, transmembrane domain 908 1242 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi230g00046 Sebi-Chr230 502407 509667 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi230g00046 641 903 Calmodulin-binding Proteins AT2G36910 29.021 1.00e-23 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi230g00046 - K05665 gmx:100804807 2471.43