Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi230g00029 ATGTTGAGTTCTCAACGCTTCAAACCCCTTCTTCTTCATCATCTAAAGGGAATACCCTTTCAAACCCCAAAAGTGAATCCTTTTGTATCAACACTCTCTTTAAAACACAGCACCACAACCACCTCTGATCAAAACCAATTCACGCTTTCTTATCTCACAACCAATTGCGGATTCTCACCAGAAATTGCTCGCAAGACTTCCAAGCAAGTTCGTTTCGACAGTGCCGAAAAGCCCGACTCAGTCATCGCTTGCTTCAGAAACCACGGCTTCTCTGACTCTGACATTAGAAGCATCCTTAGAAACGCACCCAACGTGCTCGCATGCGACCCCAACAAAAGGATTTTGCCAAAGTTTGAATTTTTACGCTCCAAAGGTGCTTCGAGCTCTGACATTGTGCAGATCGTGAGCAGGAGCCCTAGAATCCTGTATTCAAGCCTCGAGAAAAGCATAATCCCTACCTATGAGTTGTTGAGAAGGTTCCTTCAATCTGATGCGAAAATTATTGATCGTATACTTACTTGTCGATATGTCTTTGGTAACGATCTTGTTGTAAGGAATGTGGGGTTGTTGCTTGATGATGGAGTCACGGACTCAAACATCACCTATTTGTTAGGGAGAAGACCATCTATACTCATGTCTTATGACATGAGAAGGGCTTTGGATGAGGTTAAGGATATGGGGTTTGATCCTTCTAAGATTACTTTTGGTGTAGCTTTGCTAGCCAAGAGGGCCATTTCCAAATCCCAATGGGATTCAAAAGTTGATGAGTTCAAGAGATGGGGTTGGTCTGAAGAAATGGTTCTTGATGCGTTTAGGAGGAGGCCCTTCTGTATGCTTGTGTCCAAGGATAAAATTAGTGAGGTGATGAGATTTTGGGTCAATCAGATGGGTTGGAACTCTTTTGACCTTGTAAAAAGGCCAGAGATTTTTTCATATAGTTTGGAGAAAAGGGTCATTCCGAGGGCTTTTGTTGTCCACTATTTGATCTCAAAAGGTTTGAGAAAAAATAATGTCTATGAATTGTCTACCCCATTTGCTGTTACTGAAAAGTTGTTTCTTGAAAAGTATGTGAAATGTTTTAAGGAGGAAAGGTATCAACTGTTAAAGCTATACCAGGAAAAAATGAGTGTTCAAAAGAAAGGGAGGATGGTAGCTATCAATTAG 1164 0.4132 MLSSQRFKPLLLHHLKGIPFQTPKVNPFVSTLSLKHSTTTTSDQNQFTLSYLTTNCGFSPEIARKTSKQVRFDSAEKPDSVIACFRNHGFSDSDIRSILRNAPNVLACDPNKRILPKFEFLRSKGASSSDIVQIVSRSPRILYSSLEKSIIPTYELLRRFLQSDAKIIDRILTCRYVFGNDLVVRNVGLLLDDGVTDSNITYLLGRRPSILMSYDMRRALDEVKDMGFDPSKITFGVALLAKRAISKSQWDSKVDEFKRWGWSEEMVLDAFRRRPFCMLVSKDKISEVMRFWVNQMGWNSFDLVKRPEIFSYSLEKRVIPRAFVVHYLISKGLRKNNVYELSTPFAVTEKLFLEKYVKCFKEERYQLLKLYQEKMSVQKKGRMVAIN 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi230g00029 387 FunFam Mitochondrial transcription termination factor-like 146 364 - -
Sebi230g00029 387 SMART mt_12 132 163 IPR003690 GO:0003690|GO:0006355
Sebi230g00029 387 SMART mt_12 300 334 IPR003690 GO:0003690|GO:0006355
Sebi230g00029 387 SMART mt_12 96 127 IPR003690 GO:0003690|GO:0006355
Sebi230g00029 387 SMART mt_12 201 229 IPR003690 GO:0003690|GO:0006355
Sebi230g00029 387 SMART mt_12 268 299 IPR003690 GO:0003690|GO:0006355
Sebi230g00029 387 PANTHER CGI-12 PROTEIN-RELATED 44 362 IPR003690 GO:0003690|GO:0006355
Sebi230g00029 387 Gene3D Transcription termination factor 3, mitochondrial 163 369 IPR038538 -
Sebi230g00029 387 Pfam mTERF 84 229 IPR003690 GO:0003690|GO:0006355
Sebi230g00029 387 Pfam mTERF 246 350 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi230g00029 Sebi-Chr230 310108 311271 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Sebi230g00029 mTERF 2.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi230g00029 K15031 - gmx:102666739 420.624