Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi230g00028 ATGTTCAATTCCCAGCGCTACAGAATCCTTGTCCTCCTCAAGCCCCCAAAATTACAACCCCTTTTGCCATTGCCATTTTATCTGAAATTGAAATTCTGCACAACCACCTCCCAATCAGAATCAGAACCAGACTCTATTACGGTGTCCTACCTCGTCAACAATGCTGGATTCTCCCCGGAATCTGCTCTAAAAGCTTCTAAACGAGTTTGTCTCAAGACCCCAGAGAAGCCTGATTCGGTTTTCACCTTCTTCAGAAACCATGGTTTTTCAGACTCTAACATACGCGACATAGTCAAAAAGGAACCGTGGCTGCTTTCATCGGATCCCCACAATTCAGTTTTGCCAAAGTTTACTTTTTTCCTCTCCAAAGGTGCTTCCCCCTCTGACATCCCTCGCATGCTCACGGCGAACCCCAGAATCCTACAAAGAAGCTTGGAGAATTATATAATCCCTCGCTATGACCTGTTAAAGAGGTTCTTGAAATCTGATAAGGTCACCCTTTCTTGCATGATTCGCCACACGTTTGCCTTGTCTTATAACGTGTCCATAGCTAACATCAAGTTGATGATTGATTATGGAGTTTGTGATTTGGGCATTGCCAGATTGCTTCTCACGCGACCAACTATACTTGCCTCAACTAACTTGCTGAAGACTTTGGAGGAAGTGAAGGATTTTGGATTTGATCCTTCAAAATCCACTTTTGCGGTGGCGATGGTAGCTTGGAAAGGTGTCAGCAAAATCCGGTGGAATGAGAAAGTTGATGTCTTTAAGAAGTGGGGTTGGTCTGATGAGACCATTCTTCGAGCATTTAGGAGGGAGCCTAATGTGATGCTGATATCCAGTGATAAGATTAAGTTGGTGATGAGTTTTTGGGTCAATCATTTGGGTTGGGATGCTCTTGCCCTTACCAAAGGACCAAGGATTATTGGGTATAGCTTGGAGAGAAGGATCATTCCGAGGGCTTCAGTTGTGCAATTTCTTCTTAAGAAGGGTTTGAGAAAAAAGAATGCAAGCTTAGTTAGTCCATTTTTAATGACTGAGAAGTTGTTCCTGGATAAGTTCATTAAATGTTTTAAGGAGGAGTCTTCTGATCTGTTAAAGCTGTATGAGGAAAAACTCAATCTTGCCTACACAAGGGAGAACAGTGGCATGTCGATCCCCAAATAA 1167 0.4302 MFNSQRYRILVLLKPPKLQPLLPLPFYLKLKFCTTTSQSESEPDSITVSYLVNNAGFSPESALKASKRVCLKTPEKPDSVFTFFRNHGFSDSNIRDIVKKEPWLLSSDPHNSVLPKFTFFLSKGASPSDIPRMLTANPRILQRSLENYIIPRYDLLKRFLKSDKVTLSCMIRHTFALSYNVSIANIKLMIDYGVCDLGIARLLLTRPTILASTNLLKTLEEVKDFGFDPSKSTFAVAMVAWKGVSKIRWNEKVDVFKKWGWSDETILRAFRREPNVMLISSDKIKLVMSFWVNHLGWDALALTKGPRIIGYSLERRIIPRASVVQFLLKKGLRKKNASLVSPFLMTEKLFLDKFIKCFKEESSDLLKLYEEKLNLAYTRENSGMSIPK 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi230g00028 388 FunFam Mitochondrial transcription termination factor-like 145 362 - -
Sebi230g00028 388 Pfam mTERF 248 350 IPR003690 GO:0003690|GO:0006355
Sebi230g00028 388 Pfam mTERF 83 211 IPR003690 GO:0003690|GO:0006355
Sebi230g00028 388 Gene3D Transcription termination factor 3, mitochondrial 172 368 IPR038538 -
Sebi230g00028 388 PANTHER CGI-12 PROTEIN-RELATED 46 361 IPR003690 GO:0003690|GO:0006355
Sebi230g00028 388 SMART mt_12 299 333 IPR003690 GO:0003690|GO:0006355
Sebi230g00028 388 SMART mt_12 131 162 IPR003690 GO:0003690|GO:0006355
Sebi230g00028 388 SMART mt_12 267 298 IPR003690 GO:0003690|GO:0006355
Sebi230g00028 388 SMART mt_12 95 126 IPR003690 GO:0003690|GO:0006355
Sebi230g00028 388 SMART mt_12 200 228 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi230g00028 Sebi-Chr230 306872 308038 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Sebi230g00028 mTERF 1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi230g00028 K15031 - gmx:102663414 364.385