Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi230g00026 ATGTTCAATTCCCAACGCTACAGAATCCTTGTCCACCTCAAGCCCCAAAAATTATACCCTCTTTTCCCATTGCCATTGCCATTTTCTCTGAAACTGAAATTCTGCACAAGCACTTTGGAATCGGAATCAGAATCAGAATCTTTCAGGGTATCCTACCTCATCAACAACGTTGGATTCTCCCCAGAAACCGCTCTAAAAACTTCGAAACGATTTTCTTTCAAGACCCCAGAGAAGCCTGATTCGGTTTTAACCTTCTTCAGAAACCATGGTTTTTCAGACTCTAACATACACCAAATCATCAGAAAGGAACCGTGGCTGCTTTGCTCGGACCCCCATAATTCGATTCTTCCAAAGTTTGGTTTTTTCCTCTCCAAAGGTGCTTCCCCCTCTGACATTGCTCGCATGCTAACGGCGAACCCCAGAATCCTAGAAAGAAGCTTGGAGAAGTACATAATCCCTCTCTATGAATTGTTAAATGGGTTCTTGAAATCTGATAAGAACACCATTGCTTGCACAATTCTCTACTCCAGTCACCAAACCATGGCTAATGTGAAGTTGATGATTGATTATGGAATTTGTGAATCGGGCATTGCTAGATTACTTCTTACAAGGCCAACTATACTTTCCTCATATACCTTGCTGAAGTCATTGGAGGAAGTGAAGGGTTTAGGGTTTGATCCTTCAAAAACCACTTTTGTGTTGGCGTTGGCTGCCTTGAAAGGTGTCAGCAAAATCCGGTGGGATGAGAAAGTTGATGTCTTTAAGAAGTGGGGCTGGTCTGATGAGGCCATTCTTCAAACATTTAGGAAGCAGCCTAATGTGATGCTGGTATCCAGTGTTAAGATTAATTTGCTGATGAGTTTTTGGGTCAATCAATTGGGTTGGAATTCCTTGGACCTTGCCACTAGACCAAATATTTTTTTGCTTAGTTTGAAGAAAAGGATCATTCCAAGGGCCTCAGTTCTGCAATTTCTTCTGAAGAAAGGTTTGTGGAAAAAGAATGCAAGCTTACTTGTGCCCTTTACTGTGCCTGAGAAGTTGTTCCTGAGCAAGTTTTTTGGCAGTTTTAAGGAGGAATCTGCTTATCTATTGAAGTTGTATGAGGAAAAAAAGAATCTTGCGTACACCAAGGAGAACTCTGGCATGCCATCACTAAATATATAA 1164 0.4141 MFNSQRYRILVHLKPQKLYPLFPLPLPFSLKLKFCTSTLESESESESFRVSYLINNVGFSPETALKTSKRFSFKTPEKPDSVLTFFRNHGFSDSNIHQIIRKEPWLLCSDPHNSILPKFGFFLSKGASPSDIARMLTANPRILERSLEKYIIPLYELLNGFLKSDKNTIACTILYSSHQTMANVKLMIDYGICESGIARLLLTRPTILSSYTLLKSLEEVKGLGFDPSKTTFVLALAALKGVSKIRWDEKVDVFKKWGWSDEAILQTFRKQPNVMLVSSVKINLLMSFWVNQLGWNSLDLATRPNIFLLSLKKRIIPRASVLQFLLKKGLWKKNASLLVPFTVPEKLFLSKFFGSFKEESAYLLKLYEEKKNLAYTKENSGMPSLNI 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi230g00026 387 FunFam Mitochondrial transcription termination factor-like 147 360 - -
Sebi230g00026 387 Gene3D Transcription termination factor 3, mitochondrial 173 360 IPR038538 -
Sebi230g00026 387 Gene3D Transcription termination factor 3, mitochondrial 56 172 IPR038538 -
Sebi230g00026 387 SMART mt_12 297 331 IPR003690 GO:0003690|GO:0006355
Sebi230g00026 387 SMART mt_12 198 226 IPR003690 GO:0003690|GO:0006355
Sebi230g00026 387 SMART mt_12 230 260 IPR003690 GO:0003690|GO:0006355
Sebi230g00026 387 SMART mt_12 97 128 IPR003690 GO:0003690|GO:0006355
Sebi230g00026 387 SMART mt_12 133 164 IPR003690 GO:0003690|GO:0006355
Sebi230g00026 387 Pfam mTERF 83 283 IPR003690 GO:0003690|GO:0006355
Sebi230g00026 387 Pfam mTERF 183 337 IPR003690 GO:0003690|GO:0006355
Sebi230g00026 387 PANTHER CGI-12 PROTEIN-RELATED 44 357 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi230g00026 Sebi-Chr230 303273 304436 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Sebi230g00026 mTERF 1.7e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi230g00026 K15031 - gmx:102667698 338.191