Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi22g00118 ATGATTAGCAATTGCTTTGGTTCGTTGAATTGGTGTAAAGGAAGGGGTGATCCTGCTGACCAGCCACATGAACAAGTGATTGCAACTAAAGCATTTAGCTTTAACTCATTGAGATCTGCAACGGATGATTTTCATCCTTCATGCAAAATTGGTGGAGGAGGTTATGGAGTTGTCTACAAGGGAGTTTTAAGGGATGGTACTCAAGTTGCTATCAAGTCTCTTTCTGTAGAGTCTAAACAAGGAACTCATGAATTTATGACAGAAATTGATATTATATCAAATACACAACATCCAAATCTTGTGAAACTAATTGGCTGCTGTGTTGAGGGCAGTCATCGAATATTGGTGTATGAATTTCTCCAGAACAATAGTCTTGCGAGTTCTTTGCTTGGTTCAAAAAGTAAATATGTTGCTTTGGATTGGGCAAAGAGAGCTGCTATTTGCCGTGGTACAGCTTCTGGTCTAAGCTTTCTTCATGAAGAGGCTCAACCAAACATTGTTCACAGAGATATCAAGGCCAGTAACATATTGCTGGATGAGAGCTTTAATCCAAAAATTGGGGATTTTGGTCTTGCAAAACTTTTTCCTGACAATGTCACCCATGTTAGTACTAGAGTTGCAGGAACAATGGGATATCTTGCACCAGAATATGCACTTCTAGGACAGCTTACAAAGAAGGCAGATGTATACAGTTTTGGGATACTCATGCTTGAAATAATCAGCGGTAAAAGTAGTAGCAAAGCTGCATTTGGAGATAATATTTTGGTTCTGGTGGAATGGGCGTGGAAGCTGCATGAAGAAAATCGTCTTCTGGAAATTGTTGATTCAGAACTAACTGAATATGATGAGAGTGAAGTGTATCGGTTCCTTGTGGTTGCTCTATTTTGCACTCAATCAGCAGCTCAGCATAGACCCACCATGAAGCAAGTATTGAAAATGCTTTCCAAGGAAGTTCATCTTAATGAGAAGGCATTGACTGAGCCTGGAATATACAGATGGCACACCTCTGGAAAAATGGGTGATTCTTCGAATGAATCATCATCTTCTCAAGCAATCAAGTACAAAAAATCTGAAAATCCACATGAAACATCAACCCAATTTAGTGGTACAAATTTTGTGTCAGAGATGTTTCCTAGATGA 1140 0.3921 MISNCFGSLNWCKGRGDPADQPHEQVIATKAFSFNSLRSATDDFHPSCKIGGGGYGVVYKGVLRDGTQVAIKSLSVESKQGTHEFMTEIDIISNTQHPNLVKLIGCCVEGSHRILVYEFLQNNSLASSLLGSKSKYVALDWAKRAAICRGTASGLSFLHEEAQPNIVHRDIKASNILLDESFNPKIGDFGLAKLFPDNVTHVSTRVAGTMGYLAPEYALLGQLTKKADVYSFGILMLEIISGKSSSKAAFGDNILVLVEWAWKLHEENRLLEIVDSELTEYDESEVYRFLVVALFCTQSAAQHRPTMKQVLKMLSKEVHLNEKALTEPGIYRWHTSGKMGDSSNESSSSQAIKYKKSENPHETSTQFSGTNFVSEMFPR 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi22g00118 379 ProSitePatterns Protein kinases ATP-binding region signature. 50 72 IPR017441 GO:0005524
Sebi22g00118 379 MobiDBLite consensus disorder prediction 337 354 - -
Sebi22g00118 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Sebi22g00118 379 FunFam Putative LRR receptor-like serine/threonine-protein kinase 120 326 - -
Sebi22g00118 379 MobiDBLite consensus disorder prediction 336 379 - -
Sebi22g00118 379 CDD STKc_IRAK 63 316 - -
Sebi22g00118 379 ProSiteProfiles Protein kinase domain profile. 44 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi22g00118 379 Pfam Protein kinase domain 47 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi22g00118 379 SMART serkin_6 44 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi22g00118 379 Gene3D Transferase(Phosphotransferase) domain 1 120 328 - -
Sebi22g00118 379 Gene3D Phosphorylase Kinase; domain 1 17 119 - -
Sebi22g00118 379 FunFam cold-responsive protein kinase 1 15 119 - -
Sebi22g00118 379 SUPERFAMILY Protein kinase-like (PK-like) 24 314 IPR011009 -
Sebi22g00118 379 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 29 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi22g00118 Sebi-Chr22 3191003 3196190 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi22g00118 32 329 Receptor kinase-like Gene Family AT1G56120 54.027 4.85e-108 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Sebi22g00118 Pkinase 8.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi22g00118 - - gmx:100816683 637.491