Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi22g00113 ATGAGTGAAGGAGGAAGCAGCAGCGGCGCTAAATGTGGTGTATGTGGTGAAAAGATAAAAAATGCCAAATATATGCCTGCCCATTCACTTATTCACAAGTTAAATGTAGCACAGTGTTCCCAATGCGGTGCACCATTCTCAACTGTCAATGCTTTGCATCGTCATATGAGGGTAGTTCATAATAAAGACACATCAACAACGTGGTTTCAACGTGGAAACAAAAATCTACGTTGTCCAGAATGTGACAAAACATTTTCATCAGTGCAAAGGCGTGAAGAGCACATGAATATTGTTCATAAAGAGGAAAGAAGGCTTCGTCACGCAAAAATTGATCTAAACACCGTGGCAAAGGAATAA 357 0.4034 MSEGGSSSGAKCGVCGEKIKNAKYMPAHSLIHKLNVAQCSQCGAPFSTVNALHRHMRVVHNKDTSTTWFQRGNKNLRCPECDKTFSSVQRREEHMNIVHKEERRLRHAKIDLNTVAKE 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi22g00113 118 Gene3D Classic Zinc Finger 66 107 - -
Sebi22g00113 118 SUPERFAMILY beta-beta-alpha zinc fingers 38 96 IPR036236 -
Sebi22g00113 118 PANTHER TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED 11 103 - -
Sebi22g00113 118 Pfam Zinc finger, C2H2 type 77 99 IPR013087 -
Sebi22g00113 118 ProSiteProfiles Zinc finger C2H2 type domain profile. 37 65 IPR013087 -
Sebi22g00113 118 SMART c2h2final6 76 99 IPR013087 -
Sebi22g00113 118 SMART c2h2final6 10 32 IPR013087 -
Sebi22g00113 118 SMART c2h2final6 37 60 IPR013087 -
Sebi22g00113 118 ProSitePatterns Zinc finger C2H2 type domain signature. 78 99 IPR013087 -
Sebi22g00113 118 ProSitePatterns Zinc finger C2H2 type domain signature. 39 60 IPR013087 -
Sebi22g00113 118 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 104 IPR013087 -
Sebi22g00113 118 Pfam zinc-finger C2H2-type 36 60 IPR041697 -
Sebi22g00113 118 Gene3D Classic Zinc Finger 7 65 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi22g00113 zf-C2H2_11 2.7e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi22g00113 - K09228 sjo:128365223 60.4622