Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi22g00110 ATGACTACATGCAAGGACTCTGCAACAGCATCAACCCTGCAAGGAAATGAAACTGATCTACATGCTTTACTTGACTTCAAGAGTAGGATAGTTCAAGATCCATTTCAAATCATGAGTTTATGGAATGATTCCATCCACCACTGCAACTGGGAAGGAATTACCTGCAACATCTCCAATGGAAGGGTCATGTATTTGATCCTTGAAGACCTTACCCTGGCAGGTACTGTTCCACCATCTATAGGAAATCTTACATTCCTCACCAGACTCAACATTAGGAATAGTAGTTTCCATGGAGAGTTTCCTCAAGAAGTTGGACATTTACTATACCTACAACATCTAAACATTAGTTACAATTCTTTTGGTGGTAGTATTCCAAGTAATCTAAGTCACTGCATAAAACTAAGTGTGTTATCTGCTGGTCATAACAAGTTCACTGGAACAATTCCAGCATGGATAGGAAATTCTTCTTCTTTATCTCTACTTAACCTTGCTGTGAACAACTTACATGGAAGAATACCTAATGAGGTAGGCAAATTATCAAGCTTGACACTTTTTGCACTAAATGGAAATTACTTGTCTGGAATAATTCCTCCTTCAATTTTTAACATTTCTGCATTGAACTTTTTCACTGTCTCTCATAATCATCTGCATGGTAACATACCAGCTGATGTTGGTTTTACACTTCCTAATCTTGGAACATTTGCTGGTGGAGTCAACAATTTCACTGGAACAATTGCTGAATCTCTGTCAAATGCTTCAAGACTAGAAATTCTTGACTTTGCTGAAAATGGTCTCACTGGAACACTTCCTAAGAACATAGGGAGATTGCCCCATTTGAAAAGACTTAATTTTGATGAGAATAGACTTGGAACTGGGAAATCTGGTGACCTGAATTTTCTTGCTTTCTTGGTTAATTGTACTGCTCTTGAAGTTTTAGGCCTTGCTAGAAATGTTTTTGGAGGAGAATTGCCTAGCTCAATTGCTAATCTTTCAACCCAATTGAATACACTCACATTAGGTCTGAATGCAATACATGGAAGTATTCCTCTAGGAATTGGGAACCTTGTTAACTTAACTGTTCTGGGATTGGAAGATAACAGCCTAAGTGGTTCTGTTCCTGATACAATAGGGTCTGTGCCAATTGAAGTGGGTAAGTTAGTCAATCTAGAATATTTGGACCTCTCAGAAAACAAATTGTCTGGCATGATTCCATCCTCTCTTGGCAGCTGTATTAGTTTGGAATGGTTGCATTTGCAAGGTAACTTCTTTGAGGGAAACATTCCTTCAAATTTAGAGAATTTGAGAGGTTTACAAGATATAGATCTGTCACACAATAACTTGTCCGGGAAGATTCCTGAATTTCTTGGTGAGTTCAAAGTGCTCATGCATCTCAATCTTTCTTACAATGATTTTGAGGGCAATATACCAACAAATGGAATATTCAAGAATGCAACTTCCTTTTCATTGTATAGAAACAGCAAGCTTTGTGGTGGTGTCCCAGAGCTAAATTTACCTGCATGCACTATCAAAAAAGCCTCTTCCTTTGGAAAATTTCATGGCCCCAAGGTGGTTATCCTTGTAGTTAGTACATTTGTATTTGTACTCTTTCTATCTTGTTTTCTGACAACCTTCATGGTAAAAAGATCAAGAAAGAAAACTTCAAGAGCAACAACTACAAATGATTTGGAATTGGATATTTCTTACTTAGAAATTGCTAGGTGCACTGGAGGGTTCTCTCAGGATAACTTGATTGGCTCAGGAAGTTTTGGTTCTGTGTACAAAGGAACCCTTTCAAGTGATGGATCAATTATTGCAATTAAAGTATTGAATCTTGAACAAAGAGGAGCTTCAAAAAGCTTCATTGATGAATGCCAAGTTCTGAGAAATATAAGGCACCGCAACCTTCTTAAGGTCATAACTGCTATCTCAAGCATTGATCATCAAGGTAATGACTTCAAAGCTCTAGTGTTTGAGTTCATGTCTAATGGTAGTCTAGAAGATTGGTTACATCCTATAAATAATCTTCAAAATCAGACAAAGACATTGTCATTTCTCCAAAGAATGAACATAGCAATTGATGTTGCTTGTGCACTGGAATATCTCCACCACTTCTGTGAAACTCCAATTGTTCATTGTGATATAAAGCCAAGCAATGTACTTCTTGACAATGATATGGTAGCCCATGTTGGTGACTTTGGATTAGCAACATTTTTGTTTGAAGAATCATGCAATTCTCCCAAACATTCAACTATGTCAGCTAACCTAAAGGGCTCTATTGGGTACATCCCTCCAGGGAAAAGACCAACAGATGAGATGTTTGAAGGTGGCATGGGAATTAACCAGTTTGTAGCTATGGCTTTACCAAATCATGCCATAGATATAATTGATCCTTTATTGCTCTCTGAGCAAGAATTTGATGATAGAAGTGAAGAAAATTCCACAGAGGAGACAGCAATAAGGAGGGAGAAGGATCCTGAAGTCCTTGCTATGATAGAGAATTGCTTAGTTTCAGTGTTGCAAATTGGAGTGACATGCTCTGCAGCTTTGCCAAGTGAAAGAATTCCAATGACTGTGGTTGTCAACAAATTGCATGCAATCAAGAACTCGTATTTAAGACACAACCAGTGGAATAGATGA 2637 0.3781 MTTCKDSATASTLQGNETDLHALLDFKSRIVQDPFQIMSLWNDSIHHCNWEGITCNISNGRVMYLILEDLTLAGTVPPSIGNLTFLTRLNIRNSSFHGEFPQEVGHLLYLQHLNISYNSFGGSIPSNLSHCIKLSVLSAGHNKFTGTIPAWIGNSSSLSLLNLAVNNLHGRIPNEVGKLSSLTLFALNGNYLSGIIPPSIFNISALNFFTVSHNHLHGNIPADVGFTLPNLGTFAGGVNNFTGTIAESLSNASRLEILDFAENGLTGTLPKNIGRLPHLKRLNFDENRLGTGKSGDLNFLAFLVNCTALEVLGLARNVFGGELPSSIANLSTQLNTLTLGLNAIHGSIPLGIGNLVNLTVLGLEDNSLSGSVPDTIGSVPIEVGKLVNLEYLDLSENKLSGMIPSSLGSCISLEWLHLQGNFFEGNIPSNLENLRGLQDIDLSHNNLSGKIPEFLGEFKVLMHLNLSYNDFEGNIPTNGIFKNATSFSLYRNSKLCGGVPELNLPACTIKKASSFGKFHGPKVVILVVSTFVFVLFLSCFLTTFMVKRSRKKTSRATTTNDLELDISYLEIARCTGGFSQDNLIGSGSFGSVYKGTLSSDGSIIAIKVLNLEQRGASKSFIDECQVLRNIRHRNLLKVITAISSIDHQGNDFKALVFEFMSNGSLEDWLHPINNLQNQTKTLSFLQRMNIAIDVACALEYLHHFCETPIVHCDIKPSNVLLDNDMVAHVGDFGLATFLFEESCNSPKHSTMSANLKGSIGYIPPGKRPTDEMFEGGMGINQFVAMALPNHAIDIIDPLLLSEQEFDDRSEENSTEETAIRREKDPEVLAMIENCLVSVLQIGVTCSAALPSERIPMTVVVNKLHAIKNSYLRHNQWNR 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi22g00110 878 Pfam Protein kinase domain 579 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi22g00110 878 Gene3D Ribonuclease Inhibitor 242 509 IPR032675 -
Sebi22g00110 878 PANTHER OS04G0122200 PROTEIN 377 870 - -
Sebi22g00110 878 SMART LRR_typ_2 179 203 IPR003591 -
Sebi22g00110 878 SMART LRR_typ_2 355 378 IPR003591 -
Sebi22g00110 878 SMART LRR_typ_2 386 410 IPR003591 -
Sebi22g00110 878 SMART LRR_typ_2 276 299 IPR003591 -
Sebi22g00110 878 SMART LRR_typ_2 107 131 IPR003591 -
Sebi22g00110 878 SMART LRR_typ_2 434 458 IPR003591 -
Sebi22g00110 878 Gene3D Transferase(Phosphotransferase) domain 1 660 877 - -
Sebi22g00110 878 SUPERFAMILY Protein kinase-like (PK-like) 553 863 IPR011009 -
Sebi22g00110 878 ProSiteProfiles Protein kinase domain profile. 578 878 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi22g00110 878 Gene3D Ribonuclease Inhibitor 18 129 IPR032675 -
Sebi22g00110 878 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 660 765 - -
Sebi22g00110 878 PRINTS Leucine-rich repeat signature 434 447 - -
Sebi22g00110 878 PRINTS Leucine-rich repeat signature 389 402 - -
Sebi22g00110 878 Pfam Leucine rich repeat N-terminal domain 17 56 IPR013210 -
Sebi22g00110 878 ProSitePatterns Protein kinases ATP-binding region signature. 584 607 IPR017441 GO:0005524
Sebi22g00110 878 Gene3D Ribonuclease Inhibitor 130 241 IPR032675 -
Sebi22g00110 878 Pfam Leucine Rich Repeat 110 131 IPR001611 GO:0005515
Sebi22g00110 878 Pfam Leucine Rich Repeat 388 410 IPR001611 GO:0005515
Sebi22g00110 878 FunFam LRR receptor-like serine/threonine-protein kinase EFR 549 659 - -
Sebi22g00110 878 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 302 511 - -
Sebi22g00110 878 SMART serkin_6 578 871 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi22g00110 878 SUPERFAMILY L domain-like 16 290 - -
Sebi22g00110 878 Pfam Leucine rich repeat 412 471 IPR001611 GO:0005515
Sebi22g00110 878 ProSitePatterns Serine/Threonine protein kinases active-site signature. 709 721 IPR008271 GO:0004672|GO:0006468
Sebi22g00110 878 SUPERFAMILY L domain-like 228 497 - -
Sebi22g00110 878 Gene3D Phosphorylase Kinase; domain 1 540 659 - -
Sebi22g00110 878 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 56 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi22g00110 Sebi-Chr22 2993432 2996494 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi22g00110 6 875 Receptor kinase-like Gene Family AT3G47110 39.220 0.0 606
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Sebi22g00110 Pkinase 1.3e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi22g00110 - - aprc:113862431 952.97