Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi22g00109 ATGGTCTCAAGCTTGTACTCAGCAGCAACAGCAACCCCATCAGGAAATGAAACTGATCTTCATGCTTTACTTGACTTCAAGAGTAGGATAGTCCAAGATCCATTCCAAATCATGAGTTTTTGGAATGACTCCATCCATCACTGCAACTGGATAGGAATCACTTGCAACATCTCCAATGAAAGGGTCATGCAATTGAGCCTTGAACAACTGAGATTAGCAGGCACTCTTACACCTTCCATAGGAAACCTCACATTCCTCACCACACTCAACTTGCTAAACAATAGCTTCCATGGTGAACTTCCTCAAGAGTTGGGTCGTTTACTATACTTGCAACATCTAAACATCAGCTTCAATAACTTTGGTGGGAGTATTCCAAGTAATCTAAGTCACTGTACAGAACTAAGAGTCCTTGCTGCTGGTGCTAACAATCTTAAAGGAACAATCCCAACTTGGATTGGAAATCTTTCTTCTTTGTCTAGAATTAGCTTTGGATTGAACAGTTTGCATGGAAGCATACCACAAGAGGTAGGTCGTTTATCAAGCTTGACATATTTTGTGCTATATGGGAATTATTTGTCTGGCACAGTTCCCTCTTCAATCTATAACATTTCTTCCTTATACTATTTTACTCTTACTCAAAACCATCTCCATGGAAACTTACCAGCTGATGTTGGATTTACTCTTCCTAATCTTGAAGTATTTGCTGGTGGGGTCAACAATTTCACAGGGACTGTTCCTGCATCATTGTTAAATGCATCAAAACTTGTAGTTCTTGACTTTTCTCTTAATGGTCTCACTGGAACACTGCCTAAGAACATAGGGGTCTTGCACCAGTTAACTAGACTTAGCTTTGAGCACAATAGACTTGGAACTGGGAAAACAGAAGATCTAAGCTTTCTTGATTCTTTGGTCAATTGCACTGCTCTACAAGTTCTACGTCTAGGTGGAAATAATTTTGGTGGAAAGTTGCCTAACTCAATTGCTAATTTCTCAACCCAATTGCATACATTAGCCATTAATTCCAATGGAATACAAGGAAATATACCTGTTGGGATTGGAAATCTTGCTAGCCTTGCCCTTCTAGGATTGGAAGGAAACCACTTAACTGGTAGAATTCCTGATACATTAGGTAAGCTGCAGAATCTACAAGAAGTGTATCTTAATGCCAACAAACTTTCAGGAAGAATCCCATCCTCTTTAGGAAATTTAACTTCATTAACAAAACTCCTTCTGGAGGGGAACAACTTTGAAGGAAGCATACCTTCTAGTCTTGGAAATTGTCAGAAGCTATTGGTACTTAGCCTTTATAGTAACAAGCTTAGTGGCACCATACCAAAAGAAGTCATTAGCCTTTCTTCACTAGCAATATACTTGGATGTGTCTCATAATGCTTTGTCAGGGACTCTGCCAGCTGAAGTAGGTAAGCTACATAATCTTGGAGGATTGGTGCTGTCTGAGAACAATTTTTCTGGAGTCATTCCATCTTCTCTTGGTAGCTGCATTAGCTTAGAACGTTTGTGTTTGCAGGGGAACTCTTTTCAGGGAAATATTCCTCAGACTTTGAATAATTTGAGAGGTTTACAAGATATAGATCTTTCACGCAATAACCTGTCTGGTAAGATTCCTGAATTTCTTGGTGAGTTCACAGAGCTCAAGCATCTCAACCTTTCTTACAATAATTTTGAAGGTGAAATACCAAAGAATGGAATCTTCAAGAATGCAACTTCCATTTCCTTATATGGAAACAACAAGCTATGCGGTGGTATCCCAGAATTGAATTTTCCTGCATGCAATATCAGGAAAGCCTCTTTGGTAACAAAACTTCTTGCTCCTAAGGTGGCTATCCCTATAGCTATTGCACTGGTATTTGTACTCTTGCTATCATGTTTTCTTACATTATTCTCCATAGTAAGAAAAGCAAGAAAGAGAACTTCAAGATCAACTACTACTGCAAATGATTTGGCATTGGATATTTCTTACTCAGAAATTGTTAGGTGCACTGGCGGGTTCTCACAGGATAACTTGATTGGCTCGGGAAGTTTTGGTTCTGTATACAAAGGAACTCTTTCAGGTGATGGATCAATTGTTGCAGTTAAAGTATTGAATCTTCAACAAAGAGGAGCTTCAAGGAGCATCATTGATGAATGCCAAGTTCTGAGAAGTATAAGGCACCGCAACCTTCTCAAGATCATAACTGCCATCTCAAGTGTTGATCATCAAGGTAATGACTTCAAAGCTCTAGTATTTGAGTTCATGTCTAATGGAAGTCTAGAAGATTGGTTGCATCCTATAAATAATATGCAATATCAGGTCAAGACATTGACATTTATCCAAAGATTGAACATTGCAATTGATGTTGCTTGTGCACTGGAATATCTCCACCACTTCTGTGAAACTCCAATTGTTCATTGTGATATAAAGCCAAGCAATGTTCTTCTTGACAATGATATGGATGCCCATGTTGGTGACTTTGGGTTAGCTACATTTCTGTTTGAAGACACAGCCAATTTTTCTAGACAACAATCAATTATGTCAGCTAGCCTAAGGGGTTCTATTGGATACATCCCTCCAGAGTATGGCATGGGTGGCAAGCCTTCTACAGTTGGAGATATCTACAGTTATGGGATACTATTACTGGAGATTTTCACAGGGAAAAGACCAACAGATGAAGCATTTGAAGGTGGCATGGGAATTCACCAGTTTATATCAATGGCTTTACCTAACCATGTCATGGATATAATTGATCCTTCATTAGTCTCTGAAGAAGAATTTGTTGACATAAATGAAGAATTTGAAGGAGAAGAAAGAGCTATAAGGATTGAAGCCCAGGCTAAAGTTTTGTTTGAGGATTGCATTGTATCACTTATGGAAATTGGAGTGTCTTGCTCTGCAACTGCACCAAGTGAACGGATGCCCATCAGTGTCGTGGTCAACAAACTACATGATATCAAGAAATTATTTATAAATTATAAGGAAGGATAA 2982 0.3877 MVSSLYSAATATPSGNETDLHALLDFKSRIVQDPFQIMSFWNDSIHHCNWIGITCNISNERVMQLSLEQLRLAGTLTPSIGNLTFLTTLNLLNNSFHGELPQELGRLLYLQHLNISFNNFGGSIPSNLSHCTELRVLAAGANNLKGTIPTWIGNLSSLSRISFGLNSLHGSIPQEVGRLSSLTYFVLYGNYLSGTVPSSIYNISSLYYFTLTQNHLHGNLPADVGFTLPNLEVFAGGVNNFTGTVPASLLNASKLVVLDFSLNGLTGTLPKNIGVLHQLTRLSFEHNRLGTGKTEDLSFLDSLVNCTALQVLRLGGNNFGGKLPNSIANFSTQLHTLAINSNGIQGNIPVGIGNLASLALLGLEGNHLTGRIPDTLGKLQNLQEVYLNANKLSGRIPSSLGNLTSLTKLLLEGNNFEGSIPSSLGNCQKLLVLSLYSNKLSGTIPKEVISLSSLAIYLDVSHNALSGTLPAEVGKLHNLGGLVLSENNFSGVIPSSLGSCISLERLCLQGNSFQGNIPQTLNNLRGLQDIDLSRNNLSGKIPEFLGEFTELKHLNLSYNNFEGEIPKNGIFKNATSISLYGNNKLCGGIPELNFPACNIRKASLVTKLLAPKVAIPIAIALVFVLLLSCFLTLFSIVRKARKRTSRSTTTANDLALDISYSEIVRCTGGFSQDNLIGSGSFGSVYKGTLSGDGSIVAVKVLNLQQRGASRSIIDECQVLRSIRHRNLLKIITAISSVDHQGNDFKALVFEFMSNGSLEDWLHPINNMQYQVKTLTFIQRLNIAIDVACALEYLHHFCETPIVHCDIKPSNVLLDNDMDAHVGDFGLATFLFEDTANFSRQQSIMSASLRGSIGYIPPEYGMGGKPSTVGDIYSYGILLLEIFTGKRPTDEAFEGGMGIHQFISMALPNHVMDIIDPSLVSEEEFVDINEEFEGEERAIRIEAQAKVLFEDCIVSLMEIGVSCSATAPSERMPISVVVNKLHDIKKLFINYKEG 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi22g00109 993 Pfam Leucine Rich Repeat 110 131 IPR001611 GO:0005515
Sebi22g00109 993 Pfam Leucine Rich Repeat 309 330 IPR001611 GO:0005515
Sebi22g00109 993 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 175 269 - -
Sebi22g00109 993 SUPERFAMILY RNI-like 65 393 - -
Sebi22g00109 993 ProSitePatterns Serine/Threonine protein kinases active-site signature. 801 813 IPR008271 GO:0004672|GO:0006468
Sebi22g00109 993 SMART LRR_typ_2 548 573 IPR003591 -
Sebi22g00109 993 SMART LRR_typ_2 355 379 IPR003591 -
Sebi22g00109 993 SMART LRR_typ_2 403 427 IPR003591 -
Sebi22g00109 993 SMART LRR_typ_2 451 476 IPR003591 -
Sebi22g00109 993 SUPERFAMILY L domain-like 331 587 - -
Sebi22g00109 993 ProSitePatterns Protein kinases ATP-binding region signature. 676 699 IPR017441 GO:0005524
Sebi22g00109 993 CDD STKc_IRAK 676 983 - -
Sebi22g00109 993 ProSiteProfiles Protein kinase domain profile. 670 984 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi22g00109 993 FunFam Leucine-rich repeat receptor-like protein kinase 16 174 - -
Sebi22g00109 993 Pfam Protein kinase domain 671 900 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi22g00109 993 SMART serkin_6 670 984 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi22g00109 993 Gene3D Ribonuclease Inhibitor 131 224 IPR032675 -
Sebi22g00109 993 Gene3D Ribonuclease Inhibitor 225 299 IPR032675 -
Sebi22g00109 993 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 302 981 - -
Sebi22g00109 993 Gene3D Ribonuclease Inhibitor 18 130 IPR032675 -
Sebi22g00109 993 Pfam Leucine rich repeat 502 561 IPR001611 GO:0005515
Sebi22g00109 993 SUPERFAMILY Protein kinase-like (PK-like) 649 980 IPR011009 -
Sebi22g00109 993 Gene3D Transferase(Phosphotransferase) domain 1 752 990 - -
Sebi22g00109 993 FunFam LRR receptor-like serine/threonine-protein kinase EFR 295 603 - -
Sebi22g00109 993 Pfam Leucine rich repeat N-terminal domain 17 56 IPR013210 -
Sebi22g00109 993 Gene3D Phosphorylase Kinase; domain 1 651 751 - -
Sebi22g00109 993 FunFam LRR receptor-like serine/threonine-protein kinase EFR 641 751 - -
Sebi22g00109 993 Gene3D Ribonuclease Inhibitor 300 597 IPR032675 -
Sebi22g00109 993 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 752 992 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi22g00109 Sebi-Chr22 2981184 2984241 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi22g00109 16 987 Receptor kinase-like Gene Family AT3G47570 44.223 0.0 812
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Sebi22g00109 Pkinase 2.8e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi22g00109 - - gmx:106794146 1564.28